SRR3549966_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549966_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	874194
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	4296	0.49142410037131345	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	3652	0.41775624174954296	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	2969	0.33962713081993245	No Hit
TCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1446	0.16540950864453427	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCC	1237	0.1415017719179038	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1149	0.1314353564540594	No Hit
ACTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1137	0.13006266343626244	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGCG	30	2.164903E-6	45.000004	1
ATGCGAA	30	2.164903E-6	45.000004	26
AATCCGG	20	7.0323586E-4	45.0	2
CGAACTA	20	7.0323586E-4	45.0	35
TAACGCG	20	7.0323586E-4	45.0	1
CCCGTTG	20	7.0323586E-4	45.0	28
TCAATCG	20	7.0323586E-4	45.0	38
TCGGACG	25	3.890037E-5	45.0	1
TGCGATA	20	7.0323586E-4	45.0	33
AATTCGC	20	7.0323586E-4	45.0	13
CTCGAAT	20	7.0323586E-4	45.0	25
TGCGTTG	20	7.0323586E-4	45.0	1
TACGAAT	100	0.0	42.75	12
TTAACGG	55	6.002665E-11	40.909092	2
GCTACGA	110	0.0	40.909092	10
CGAATAT	100	0.0	40.5	14
TTACGAG	50	1.0804797E-9	40.5	1
CATACGA	190	0.0	40.263157	18
ATACGAA	190	0.0	40.263157	19
TCGTAAG	45	1.9274012E-8	40.0	1