SRR3549959_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549959_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	951336
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	3769	0.3961796883540621	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3437	0.36128139794983055	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3342	0.35129544135825824	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1656	0.17407099069098614	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCC	1336	0.14043408427726903	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1283	0.1348629716524971	No Hit
ACTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1093	0.11489105846935257	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	20	7.0326723E-4	45.000004	1
ACGTATG	20	7.0326723E-4	45.000004	1
ATAACGC	40	6.8121153E-9	45.000004	11
TACCGAC	20	7.0326723E-4	45.000004	14
CGTACCA	25	3.890298E-5	45.0	22
CGTAAGG	135	0.0	41.666664	2
GCGTTAG	105	0.0	40.714287	1
TAACGCC	45	1.927765E-8	40.000004	12
CGTTCAT	80	0.0	39.375004	17
GTATGCG	40	3.4573895E-7	39.375004	1
GTTGACG	70	0.0	38.571426	1
TTTAGCG	35	6.2471536E-6	38.571426	1
CTATCGG	35	6.2471536E-6	38.571426	2
TAACGCG	35	6.2471536E-6	38.571426	1
GTATACG	35	6.2471536E-6	38.571426	1
TTACGGT	35	6.2471536E-6	38.571426	34
TACGTGT	35	6.2471536E-6	38.571426	12
CGTTAGG	185	0.0	37.7027	2
CGTTCGG	150	0.0	37.5	45
TCGCATC	30	1.1397741E-4	37.499996	24