SRR3549956_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549956_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	724881
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	2713	0.37426832818076344	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	2582	0.3561963963740255	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2310	0.31867299598140936	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT	1865	0.257283609309666	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG	1214	0.16747576498763245	No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	919	0.1267794300029936	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC	897	0.12374444908888493	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	878	0.12112332920851837	No Hit
ACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	738	0.10180981430055416	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATAA	20	7.0315605E-4	45.0	21
GCACGAT	40	6.8084773E-9	45.0	41
GTTAGAA	20	7.0315605E-4	45.0	9
TAACGCG	35	1.2111013E-7	45.0	1
TCGTACA	20	7.0315605E-4	45.0	1
CGTAAAT	20	7.0315605E-4	45.0	15
AATACCG	20	7.0315605E-4	45.0	1
ATCACGC	30	2.1643882E-6	44.999996	45
AATAGCG	50	1.0804797E-9	40.5	1
GATGCGA	45	1.9266736E-8	40.0	11
GCTAACG	45	1.9266736E-8	40.0	1
AGGGTAC	215	0.0	38.720932	6
ATAGCGG	140	0.0	38.571426	2
ATAGACG	35	6.2450963E-6	38.571426	1
ATATGCG	35	6.2450963E-6	38.571426	1
AAGCACG	35	6.2450963E-6	38.571426	1
GCGATAT	35	6.2450963E-6	38.571426	9
TTATTCG	35	6.2450963E-6	38.571426	13
CAATAGG	100	0.0	38.25	2
CACAACG	155	0.0	37.741936	12