SRR3549951_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549951_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	882905
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	3598	0.4075183626777513	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	3115	0.35281259025602985	No Hit
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	1907	0.2159915279673351	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1833	0.20761010527746473	No Hit
CGCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTG	1331	0.15075234594888465	No Hit
TCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	1260	0.14271071066536037	No Hit
ACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	986	0.11167679421908358	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATA	20	7.032396E-4	45.000004	10
TGATTCG	40	6.8121153E-9	45.000004	15
CGTACTC	20	7.032396E-4	45.000004	17
TCGTACT	20	7.032396E-4	45.000004	16
TACTACG	20	7.032396E-4	45.000004	1
CCGGTAT	20	7.032396E-4	45.000004	42
CGGTATC	20	7.032396E-4	45.000004	43
CCATCGA	50	2.1827873E-11	45.0	31
GTTAACG	35	1.2115015E-7	45.0	1
ACTACGA	35	1.2115015E-7	45.0	32
GCGTAAG	95	0.0	42.63158	1
ACTACGG	75	0.0	42.000004	2
TTAACGG	65	0.0	41.53846	2
GCGTATG	65	0.0	41.53846	1
GACTACG	50	1.0804797E-9	40.5	1
TCACGAC	45	1.9274012E-8	40.0	25
CGCATGG	90	0.0	40.0	2
TAAACGG	45	1.9274012E-8	40.0	2
TACGTAG	45	1.9274012E-8	40.0	1
ACGGTCT	45	1.9274012E-8	40.0	30