SRR3549926_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549926_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1362059
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	5588	0.4102612295062108	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	4615	0.338825263810158	Illumina Single End Adapter 1 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT	3180	0.23347006260374917	Illumina Single End Adapter 1 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2028	0.14889222860390042	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1925	0.14133014795981672	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1872	0.13743898024975423	No Hit
TCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	1537	0.11284386359181209	Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG	1490	0.10939320543383216	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATACG	40	6.8175723E-9	45.0	1
ACGTTAC	20	7.0337474E-4	45.0	25
ATTACGC	20	7.0337474E-4	45.0	27
ATAGCGC	20	7.0337474E-4	45.0	2
GCACGAT	25	3.8911872E-5	45.0	9
CGCGATC	20	7.0337474E-4	45.0	36
TCGCTTA	20	7.0337474E-4	45.0	41
TACTCGT	20	7.0337474E-4	45.0	33
CGTAACG	20	7.0337474E-4	45.0	2
TACCTCG	30	2.1657997E-6	44.999996	1
GCCGATT	110	0.0	42.954544	9
GTACGAG	100	0.0	42.75	1
CGTAAGG	160	0.0	42.1875	2
CGACGGT	115	0.0	41.086956	28
CGGTCTA	115	0.0	41.086956	31
GAATGCG	55	6.184564E-11	40.909092	1
TCGTAAG	55	6.184564E-11	40.909092	1
AATGCGA	360	0.0	40.625	25
AGGGTAA	410	0.0	40.060974	6
CGAGGGT	270	0.0	40.000004	4