SRR3549924_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549924_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	497133
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	2869	0.5771091438307254	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	2442	0.4912166361919245	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	1640	0.3298915984253711	No Hit
TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	956	0.19230266347235048	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	735	0.14784775905039496	No Hit
ACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	700	0.14080738957180472	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	676	0.13597970764362857	No Hit
TTAGTAGGGAAGAATTCTTTTATTGCTGTTTCTTTATTTCCTTGTAAAGAT	622	0.1251174233052322	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGAACG	20	7.0294185E-4	45.000004	1
TAAACGG	20	7.0294185E-4	45.000004	2
TAACGAC	20	7.0294185E-4	45.000004	14
AATGCGC	20	7.0294185E-4	45.000004	35
AAACCCG	20	7.0294185E-4	45.000004	33
CTTGACG	20	7.0294185E-4	45.000004	1
TTAACGG	40	6.8012014E-9	45.000004	2
TTAACGA	20	7.0294185E-4	45.000004	13
TTACGAG	20	7.0294185E-4	45.000004	1
CGGTCAT	20	7.0294185E-4	45.000004	38
GCTAATT	20	7.0294185E-4	45.000004	32
ACCTTGC	20	7.0294185E-4	45.000004	11
ACGGTCA	20	7.0294185E-4	45.000004	37
TTTAGCG	25	3.887601E-5	45.0	1
CAAACGT	25	3.887601E-5	45.0	27
ACACGCG	100	0.0	45.0	36
GGTAACG	25	3.887601E-5	45.0	1
CAGTTCG	25	3.887601E-5	45.0	12
TTATGCG	35	1.2100645E-7	45.0	1
CGCAGTA	35	1.2100645E-7	45.0	37