SRR3549923_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549923_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	451050
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	2770	0.6141226028156523	No Hit
CCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	2587	0.5735506041458819	No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT	2014	0.4465136902782396	No Hit
GGCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCCT	1912	0.4238997893803348	No Hit
GGGCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCC	1276	0.2828954661345749	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1217	0.26981487639951224	No Hit
TCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	1006	0.22303514022835605	No Hit
TGGCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCC	866	0.1919964527214278	No Hit
ACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	765	0.16960425673428667	No Hit
GTGGCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGC	706	0.15652366699922404	No Hit
CGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	681	0.1509810442301297	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	610	0.13523999556590177	No Hit
AAAACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTC	511	0.11329120940028821	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	499	0.11063075047112293	No Hit
GCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCCTA	488	0.10819199645272144	No Hit
AGGCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCC	469	0.10397960314820973	No Hit
GCCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTG	462	0.10242766877286331	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	456	0.10109743930828068	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTTTAG	45	3.8380676E-10	45.000004	1
ACTATAT	20	7.028725E-4	45.0	22
CTCACGT	25	3.887024E-5	45.0	45
GCGACGT	25	3.887024E-5	45.0	17
GGTAAAC	25	3.887024E-5	45.0	8
GACCGTT	20	7.028725E-4	45.0	15
CGCATAC	20	7.028725E-4	45.0	11
ACCGAGT	20	7.028725E-4	45.0	21
CCTACCG	20	7.028725E-4	45.0	36
ATTCGTC	20	7.028725E-4	45.0	30
ATTCGCG	20	7.028725E-4	45.0	1
CAACACG	20	7.028725E-4	45.0	1
CCTCGTG	155	0.0	45.0	15
ATCACGG	25	3.887024E-5	45.0	2
TATTGAG	20	7.028725E-4	45.0	1
ATTCCCC	20	7.028725E-4	45.0	42
ATTCCAC	20	7.028725E-4	45.0	16
TCAATCG	25	3.887024E-5	45.0	43
TGACCTC	20	7.028725E-4	45.0	14
TACGCGA	20	7.028725E-4	45.0	1