SRR3549912_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549912_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	725484
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	3168	0.4366739997022678	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	2696	0.3716139845951117	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC	1826	0.2516940414950571	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG	1711	0.23584255476344068	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	1656	0.2282614089352763	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC	1566	0.21585589758009827	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1105	0.15231211163857508	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	848	0.11688748476878882	No Hit
ACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	813	0.11206311924177514	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGTT	20	7.0315634E-4	45.000004	23
CGTCTCA	20	7.0315634E-4	45.000004	15
CGATTGT	20	7.0315634E-4	45.000004	10
ATCGTGT	20	7.0315634E-4	45.000004	28
CAAGGCG	30	2.16439E-6	45.000004	1
TCTCGAG	20	7.0315634E-4	45.000004	1
TCGTCTC	20	7.0315634E-4	45.000004	14
TCGTAAG	20	7.0315634E-4	45.000004	1
CGGTCTA	40	6.8084773E-9	45.000004	31
CCAACGG	20	7.0315634E-4	45.000004	2
TAGTGCG	40	6.8084773E-9	45.000004	1
CATCCGC	20	7.0315634E-4	45.000004	17
CGTGCAT	25	3.8893777E-5	45.0	21
TACGATG	25	3.8893777E-5	45.0	1
GCGATAC	25	3.8893777E-5	45.0	9
ACGTAAG	25	3.8893777E-5	45.0	1
ATCGGTA	25	3.8893777E-5	45.0	12
CACGTGC	25	3.8893777E-5	45.0	19
TTCGCTA	25	3.8893777E-5	45.0	27
CGAATAT	70	0.0	41.785717	14