SRR3549910_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549910_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	969437
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	3905	0.40281111614266835	No Hit
CCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	3270	0.33730918048310515	No Hit
CTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGCT	2226	0.2296178090995083	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTC	1462	0.15080918099886842	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGC	1455	0.1500871124167945	No Hit
TCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1347	0.13894662572193964	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCG	1306	0.1347173668840781	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1133	0.11687195764139392	No Hit
ACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1119	0.11542782047724608	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1110	0.11449944658600818	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1050	0.10831028731108881	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1044	0.10769137138359687	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	979	0.10098644883576756	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	20	7.0327386E-4	45.000004	11
GTTAACG	40	6.8139343E-9	45.000004	1
TATAGCG	40	6.8139343E-9	45.000004	1
TACTAGA	35	1.2116652E-7	45.000004	30
GACGCGA	30	2.1651485E-6	45.000004	23
CCGCACG	30	2.1651485E-6	45.000004	38
GTTGCGT	20	7.0327386E-4	45.000004	35
CAACGTA	25	3.890352E-5	45.0	18
TAGAACG	25	3.890352E-5	45.0	2
CGAATAT	115	0.0	44.999996	14
CGGTCTA	85	0.0	42.35294	31
CACGCTT	55	6.002665E-11	40.909092	13
TACGTAG	55	6.002665E-11	40.909092	1
AGTCACG	50	1.0804797E-9	40.5	1
TAACGCC	45	1.927765E-8	40.0	12
ACGATAG	45	1.927765E-8	40.0	1
TACGTTG	45	1.927765E-8	40.0	1
CAGGTCG	40	3.4574805E-7	39.375004	1
GTATCGC	40	3.4574805E-7	39.375004	5
CGTAAGG	160	0.0	39.375004	2