SRR3549905_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549905_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	977950
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2125	0.21729127255994685	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1563	0.15982412188762204	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1412	0.1443836596963035	No Hit
CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	995	0.10174344291630452	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAGCG	40	6.8139343E-9	45.0	1
CCCGTAG	20	7.03277E-4	45.0	27
GTTAACG	20	7.03277E-4	45.0	1
CGCAATA	20	7.03277E-4	45.0	32
CGGTCTA	155	0.0	42.09677	31
GCGTAAG	95	0.0	40.26316	1
AATAGCG	40	3.457517E-7	39.375	1
TCACGAC	175	0.0	38.571426	25
TATAGCG	65	9.094947E-12	38.07692	1
ATAACGG	65	9.094947E-12	38.07692	2
ATAGGGT	220	0.0	37.840908	4
CTCACGA	185	0.0	37.7027	24
CGTAAGG	150	0.0	37.500004	2
GGATCGA	30	1.1397974E-4	37.499996	8
CGCGAGG	120	0.0	37.499996	2
ATCGACG	30	1.1397974E-4	37.499996	15
CCCGAAT	30	1.1397974E-4	37.499996	29
CGTTAGG	195	0.0	36.923077	2
TACGGGA	265	0.0	36.509434	4
TAAGGGA	715	0.0	36.503498	4