SRR3549902_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549902_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	571569
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	2848	0.49827754829250714	No Hit
CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	2750	0.4811317618695206	No Hit
CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT	1758	0.3075744135878608	No Hit
TCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1026	0.17950588642841023	No Hit
ACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	898	0.15711138987593798	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	750	0.131217753237142	No Hit
AGCCGAGGATTGATATTTATTTTTGCATTGCAATAGCTGAAGGCGTTTTAT	735	0.12859339817239912	No Hit
CGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	681	0.1191457199393249	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC	645	0.1128472677839421	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG	642	0.11232239677099352	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	638	0.11162256875372878	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATAAGC	20	7.030306E-4	45.000004	14
GACGTAG	25	3.8883354E-5	45.000004	1
AGCCACG	25	3.8883354E-5	45.000004	1
CGTCTAC	35	1.210501E-7	45.000004	25
TAAGTCG	20	7.030306E-4	45.000004	17
GGTCAAT	30	2.1635788E-6	45.000004	8
ACCTCGT	20	7.030306E-4	45.000004	24
TATTCGG	20	7.030306E-4	45.000004	42
AATTCGT	30	2.1635788E-6	45.000004	31
TTAACGG	25	3.8883354E-5	45.000004	2
ACTCGAA	20	7.030306E-4	45.000004	45
CGGTCTA	20	7.030306E-4	45.000004	31
ACCGTAG	20	7.030306E-4	45.000004	17
CACACCG	35	1.210501E-7	45.000004	17
CGACTCA	20	7.030306E-4	45.000004	34
AGTAGAT	20	7.030306E-4	45.000004	19
CGTCAGT	20	7.030306E-4	45.000004	15
TGCACTA	20	7.030306E-4	45.000004	41
ATCGACG	25	3.8883354E-5	45.000004	1
TGCAACG	20	7.030306E-4	45.000004	1