SRR3549899_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549899_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	467075
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	2008	0.4299095434352085	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	1418	0.30359150029438525	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT	1021	0.2185944441470856	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	661	0.14151902799336294	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	545	0.11668361612160788	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	544	0.11646951774340308	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTG	480	0.10276722153829684	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	30	2.1627238E-6	45.000004	4
AATGACG	30	2.1627238E-6	45.000004	1
CTTGTCG	25	3.887237E-5	45.0	42
CTATGCG	20	7.028982E-4	45.0	1
CGAACGA	20	7.028982E-4	45.0	22
CGACGTC	25	3.887237E-5	45.0	18
CGCGGAA	20	7.028982E-4	45.0	15
GCGAAGT	20	7.028982E-4	45.0	18
GACGTCG	25	3.887237E-5	45.0	19
TAACGCG	20	7.028982E-4	45.0	1
ATCGTAC	25	3.887237E-5	45.0	28
TCGCTAT	25	3.887237E-5	45.0	23
GTCGTGC	20	7.028982E-4	45.0	24
CGAATCC	20	7.028982E-4	45.0	23
AGCGAAC	20	7.028982E-4	45.0	10
TCATCGC	20	7.028982E-4	45.0	32
ATAACGG	40	6.7993824E-9	45.0	2
TAAGCGA	20	7.028982E-4	45.0	25
CCACGAC	20	7.028982E-4	45.0	11
TGTCGGC	25	3.887237E-5	45.0	44