SRR3549898_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549898_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1066912
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	3029	0.2839034522059926	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	2552	0.2391949851534147	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1962	0.1838952041030563	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	1834	0.17189796346840225	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1083	0.10150790318226809	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	105	0.0	45.000004	31
CTATCGC	20	7.033059E-4	45.0	23
CCGTGAT	20	7.033059E-4	45.0	39
TATCGAG	20	7.033059E-4	45.0	1
ATCGCGC	20	7.033059E-4	45.0	23
ATAGTCG	30	2.165356E-6	44.999996	1
CGAATAT	115	0.0	43.04348	14
CGACGGT	110	0.0	42.954548	28
TATACGG	70	0.0	41.785713	2
AACACGT	265	0.0	40.75472	41
ACACGAC	290	0.0	39.568966	26
CTAGGGT	165	0.0	38.181816	4
GCGAGAC	310	0.0	37.74194	21
GTTAGCG	30	1.1398672E-4	37.499996	1
CGCGAGT	30	1.1398672E-4	37.499996	29
ACGATAG	30	1.1398672E-4	37.499996	1
TAGTCGA	30	1.1398672E-4	37.499996	11
TTGGGTA	145	0.0	37.24138	5
GCAATTG	85	0.0	37.058823	1
TACGGGA	335	0.0	36.9403	4