SRR3549894_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549894_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1031842
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37047	3.590375270632519	No Hit
GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	4804	0.46557515588626947	No Hit
CCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	4484	0.4345626559104979	No Hit
CTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGCT	2783	0.26971183572678764	No Hit
TCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1722	0.16688601549462032	No Hit
ACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	1321	0.12802347646248166	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCC	1317	0.1276358202127845	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG	1238	0.11997960928126594	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAACC	30	2.165285E-6	45.000004	26
AGCGTTC	35	1.2117744E-7	45.0	7
CGTATGT	20	7.0329505E-4	45.0	44
CGAGTAA	20	7.0329505E-4	45.0	33
CCGTGCG	20	7.0329505E-4	45.0	16
CGTCTAG	20	7.0329505E-4	45.0	40
CTAGTCG	20	7.0329505E-4	45.0	1
GTTCCGC	25	3.8905273E-5	45.0	14
ACGTAGG	55	1.8189894E-12	45.0	2
ATCGGTC	20	7.0329505E-4	45.0	26
CGACTTA	20	7.0329505E-4	45.0	25
CACGTAG	25	3.8905273E-5	45.0	1
TAAATCG	20	7.0329505E-4	45.0	27
ACATACC	20	7.0329505E-4	45.0	30
GTGCGAC	20	7.0329505E-4	45.0	8
CGTTTTT	26035	0.0	44.37776	1
CACAACG	125	0.0	41.399998	12
CGCACGG	105	0.0	40.714287	2
ACGGGTC	45	1.9279469E-8	40.0	5
TCATCGA	45	1.9279469E-8	40.0	16