SRR3549892_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549892_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	931647
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41144	4.416264958723637	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	2868	0.3078419186666194	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	2436	0.26147242464152193	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT	1850	0.198573064690811	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1122	0.12043188031518376	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT	1120	0.12021720673173422	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG	1082	0.11613840864619325	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC	1078	0.1157090614792942	No Hit
TCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC	1052	0.11291830489445036	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTTT	1048	0.11248895772755133	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	973	0.10443869834819411	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	932	0.10003788988747883	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGAT	45	3.8380676E-10	45.000004	25
AGTACGG	45	3.8380676E-10	45.000004	2
AGTCACG	20	7.032599E-4	45.0	1
CGTGAAT	20	7.032599E-4	45.0	15
TAGCGCG	40	6.8121153E-9	45.0	1
GCGCCTA	20	7.032599E-4	45.0	9
ATATGCG	25	3.890234E-5	45.0	13
CGCCTAG	20	7.032599E-4	45.0	10
TACGCTA	25	3.890234E-5	45.0	21
ACGATAC	20	7.032599E-4	45.0	38
GCTTACG	35	1.2115925E-7	45.0	1
TGTTACG	25	3.890234E-5	45.0	1
ACTAACG	20	7.032599E-4	45.0	1
CGTACGA	20	7.032599E-4	45.0	11
GGATTAC	25	3.890234E-5	45.0	8
GGTTCGA	20	7.032599E-4	45.0	41
TCGACAG	35	1.2115925E-7	45.0	1
CGATATC	25	3.890234E-5	45.0	39
TGTCGCC	20	7.032599E-4	45.0	21
AATACGG	35	1.2115925E-7	45.0	2