SRR3549890_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549890_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1365578
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50579	3.70385287402111	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	2982	0.21836907155797763	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	2517	0.18431755637539562	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	1563	0.11445702845242088	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1367	0.10010413173030029	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	35	1.2121563E-7	45.000004	1
ATTGTCG	20	7.033753E-4	45.0	13
CTAAGCG	25	3.891193E-5	45.0	1
TCGATCC	25	3.891193E-5	45.0	13
TAGCCGT	20	7.033753E-4	45.0	44
ATCGTGT	20	7.033753E-4	45.0	30
CCGTAGA	20	7.033753E-4	45.0	32
CAAATCG	20	7.033753E-4	45.0	14
CGTAACG	40	6.8175723E-9	45.0	1
ACGTATC	20	7.033753E-4	45.0	37
CGTTTTT	37940	0.0	44.507774	1
AATACGG	80	0.0	42.1875	2
GTACACG	50	1.0822987E-9	40.5	1
TACGAAT	95	0.0	40.26316	12
GTTTTTT	42095	0.0	40.24825	2
ATTACGG	90	0.0	40.0	2
CGAATAT	90	0.0	40.0	14
TTACGAG	45	1.9286745E-8	40.0	1
TCGGCGT	155	0.0	39.193546	4
ATGGGCG	425	0.0	39.176468	5