SRR3549889_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549889_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	776567
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25306	3.258701438510779	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	5089	0.6553201462333579	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	4812	0.6196503328109487	No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	2886	0.3716356734190353	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	2036	0.2621795672491878	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGC	1403	0.18066696112505426	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG	1397	0.17989432978738473	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCG	1336	0.17203924452107802	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	1290	0.1661157375989451	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1234	0.15890451178069634	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC	1140	0.1467999541572073	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT	850	0.10945610616984755	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG	793	0.1021161084619872	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	65	0.0	45.000004	4
GTTCGCG	70	0.0	45.000004	1
CGAATTT	35	1.2112469E-7	45.000004	1
CGAATCT	35	1.2112469E-7	45.000004	27
CTCGAGG	35	1.2112469E-7	45.000004	2
ACGCGAA	20	7.0318725E-4	45.0	11
CTTCGTC	20	7.0318725E-4	45.0	24
CTTCGGA	20	7.0318725E-4	45.0	13
CGGAATT	20	7.0318725E-4	45.0	14
AGTCCGA	20	7.0318725E-4	45.0	11
TCCGCTT	20	7.0318725E-4	45.0	20
CGTATTT	25	3.8896324E-5	45.0	1
CTATCAG	25	3.8896324E-5	45.0	1
GACACGT	20	7.0318725E-4	45.0	23
AGCCCGT	20	7.0318725E-4	45.0	34
GTTTACG	20	7.0318725E-4	45.0	1
TAGCGTG	20	7.0318725E-4	45.0	1
CGCATAC	25	3.8896324E-5	45.0	30
TTGTCGC	25	3.8896324E-5	45.0	43
ACCGAGT	20	7.0318725E-4	45.0	11