SRR3549887_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549887_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1126077
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43428	3.8565746392120612	No Hit
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	3379	0.30006829017909076	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	3017	0.2679212877982589	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG	2313	0.20540336051619915	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC	2133	0.18941866319976344	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC	1817	0.1613566390220207	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT	1700	0.15096658576633748	No Hit
TCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	1162	0.10319010156499067	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	45	3.8562575E-10	45.000004	2
GTCATCG	20	7.0332276E-4	45.0	43
TCCGCGA	20	7.0332276E-4	45.0	15
CTCGTAG	40	6.8157533E-9	45.0	1
CGCGGTC	20	7.0332276E-4	45.0	31
CGACGGT	20	7.0332276E-4	45.0	28
GCGAACG	20	7.0332276E-4	45.0	1
CGGTTGA	20	7.0332276E-4	45.0	41
GGCGTAC	20	7.0332276E-4	45.0	8
ATTCGTG	20	7.0332276E-4	45.0	12
TCTAGCG	25	3.890755E-5	45.0	1
TACGCGC	20	7.0332276E-4	45.0	34
ACGGAAC	20	7.0332276E-4	45.0	20
CTCGAAC	20	7.0332276E-4	45.0	21
CCACGCG	20	7.0332276E-4	45.0	17
TGTCGTA	20	7.0332276E-4	45.0	18
GTCGGTA	20	7.0332276E-4	45.0	41
GTTTACG	30	2.1654632E-6	44.999996	1
ACGGTTG	30	2.1654632E-6	44.999996	1
CGTTTTT	29250	0.0	44.376923	1