SRR3549884_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549884_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1031305
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35202	3.413345227648465	No Hit
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	2581	0.2502654403886338	No Hit
CCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	2418	0.23446022272751513	No Hit
CTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGCT	1333	0.12925371252927115	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	20	7.0329476E-4	45.000004	37
CGAAACT	20	7.0329476E-4	45.000004	44
ACGCATG	20	7.0329476E-4	45.000004	26
AACGCAT	20	7.0329476E-4	45.000004	25
TTCGGTA	20	7.0329476E-4	45.000004	25
AACCTCG	20	7.0329476E-4	45.000004	12
TATAGCG	20	7.0329476E-4	45.000004	1
CAGTCGA	20	7.0329476E-4	45.000004	28
CGTCCTC	20	7.0329476E-4	45.000004	31
CGATCTA	40	6.8139343E-9	45.000004	10
TACGTTG	40	6.8139343E-9	45.000004	1
GTCGACG	25	3.890527E-5	45.0	30
CCTCGCA	25	3.890527E-5	45.0	37
ACGATTC	25	3.890527E-5	45.0	17
TCGTCGG	25	3.890527E-5	45.0	2
TTGCGAA	25	3.890527E-5	45.0	23
ATAACGG	25	3.890527E-5	45.0	2
TATCGTG	25	3.890527E-5	45.0	1
CAACGTA	30	2.165285E-6	44.999996	35
ACGTTAG	30	2.165285E-6	44.999996	1