SRR3549872_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549872_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	713243
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28905	4.052616008849719	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	3425	0.4802009974160279	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	2310	0.3238727894981093	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	1466	0.20554004736113776	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	1221	0.17118990302042922	No Hit
TCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	912	0.1278666597499029	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC	803	0.11258435063505705	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	65	0.0	45.000004	14
CCGATAC	20	7.031484E-4	45.0	11
TACGGAC	20	7.031484E-4	45.0	38
TATTGCG	20	7.031484E-4	45.0	1
CACTCGA	20	7.031484E-4	45.0	38
CGAGCTA	20	7.031484E-4	45.0	7
CAGCTTA	20	7.031484E-4	45.0	31
ACGTCCA	20	7.031484E-4	45.0	29
TTACGCG	20	7.031484E-4	45.0	1
GTAAGCG	20	7.031484E-4	45.0	1
TTCGCGC	20	7.031484E-4	45.0	31
TTACCGA	20	7.031484E-4	45.0	36
GATTACC	20	7.031484E-4	45.0	34
ACGGTAG	45	3.8380676E-10	45.0	1
TAGGTCG	25	3.889313E-5	44.999996	1
TATAGCG	60	0.0	44.999996	1
CGTAAAT	25	3.889313E-5	44.999996	28
TGTAGCG	30	2.164339E-6	44.999996	1
CGTTTTT	20695	0.0	44.55424	1
AAGCTAC	75	0.0	42.000004	8