SRR3549870_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549870_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1217933
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48088	3.9483288489596715	No Hit
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	3614	0.2967322504604112	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	3446	0.28293838823646295	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	1848	0.15173248446343107	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTAGT	30	2.1656087E-6	45.000004	11
TAGGCCG	30	2.1656087E-6	45.000004	1
TACACGG	30	2.1656087E-6	45.000004	2
CGAACGT	20	7.033453E-4	45.0	37
ATTAGCG	70	0.0	45.0	1
CACGAAC	25	3.8909442E-5	45.0	43
TAACGAC	25	3.8909442E-5	45.0	10
TTATCCG	25	3.8909442E-5	45.0	1
CTGCGTA	20	7.033453E-4	45.0	24
GCCGATT	20	7.033453E-4	45.0	9
TGCGATA	25	3.8909442E-5	45.0	14
CATAGCG	20	7.033453E-4	45.0	1
CTACACG	20	7.033453E-4	45.0	27
CGGTCTA	20	7.033453E-4	45.0	31
CCGCAAT	20	7.033453E-4	45.0	33
GATAGTC	20	7.033453E-4	45.0	40
CGTTTTT	33005	0.0	44.366005	1
TCTAGCG	55	6.184564E-11	40.909092	1
TTCGACG	55	6.184564E-11	40.909092	25
GTACGAG	55	6.184564E-11	40.909092	1