SRR3549869_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549869_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1269143
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55066	4.338833370234875	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	3116	0.24552000838361002	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	2581	0.2033655781893766	No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT	1431	0.1127532516036412	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1301	0.1025101190330798	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAACG	30	2.1656815E-6	45.000004	1
CTTCGAA	20	7.033565E-4	45.0	14
CGGTTAG	35	1.2120654E-7	45.0	1
GCGATAC	25	3.891036E-5	45.0	9
GCTAACG	40	6.8157533E-9	45.0	1
GCTCGAA	20	7.033565E-4	45.0	9
CCGTTCA	20	7.033565E-4	45.0	27
CGTTTTT	35560	0.0	44.50647	1
ACGGGTC	110	0.0	42.954544	5
CCCTCGT	95	0.0	42.63158	14
GTTTTTT	39535	0.0	40.264957	2
TAGGGAC	520	0.0	40.240383	5
CGGTAGT	120	0.0	39.375004	12
CGCGACC	115	0.0	39.130436	10
TACGGGT	105	0.0	38.57143	4
GTATTCG	35	6.248805E-6	38.571426	1
TATAGCG	35	6.248805E-6	38.571426	1
GCCCGAA	35	6.248805E-6	38.571426	25
GCTACGA	130	0.0	38.07692	10
GGCACGT	60	1.5643309E-10	37.500004	8