SRR3549865_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549865_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1588702
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	74666	4.6998115442669555	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	3309	0.20828324002865234	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	2111	0.13287576902402087	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	1749	0.11008987210943273	No Hit
GCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	1703	0.10719442664514804	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	1680	0.10574670391300571	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT	1622	0.10209592484934243	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGATT	20	7.034103E-4	45.0	43
TACGCTA	20	7.034103E-4	45.0	24
TACGCGC	20	7.034103E-4	45.0	12
TCGTAAG	20	7.034103E-4	45.0	1
TATAACG	20	7.034103E-4	45.0	1
CGTTTTT	51715	0.0	44.534466	1
AATACGG	80	0.0	42.1875	2
TATAGCG	60	3.6379788E-12	41.249996	1
TAGACGG	105	0.0	40.714287	2
GTTTTTT	57340	0.0	40.3658	2
TCATGCG	45	1.9290383E-8	40.0	1
ATTAGCG	40	3.4593359E-7	39.375	1
CATACGG	40	3.4593359E-7	39.375	2
GCGATAC	80	0.0	39.375	9
CATCGGA	40	3.4593359E-7	39.375	27
TAATACG	35	6.2497966E-6	38.57143	1
ACTAGCG	35	6.2497966E-6	38.57143	1
TATTCGA	35	6.2497966E-6	38.57143	19
CGTACTG	35	6.2497966E-6	38.57143	1
TCGATGG	90	0.0	37.5	2