SRR3549854_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549854_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	808226
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGC	16917	2.0931026717774484	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCG	14268	1.7653478111320349	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTC	11969	1.4808976697111946	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	5012	0.62012357929589	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGCCACAT	3711	0.4591537515496903	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2913	0.3604189917176631	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCT	2791	0.345324203873669	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	2542	0.31451598933961544	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGCCACATCGTA	2189	0.27084008680740285	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTC	1774	0.21949306258398021	No Hit
CTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGCT	1756	0.21726596273814502	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCT	1598	0.1977169752024805	No Hit
TCTGTCTCTTATACACATCTGACGCAAGCCACATCGTATGCCGTCTTCTGC	910	0.11259226998389063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTCC	30	2.1646993E-6	45.000004	19
AATGCGA	30	2.1646993E-6	45.000004	25
CCGTAAC	30	2.1646993E-6	45.000004	40
CGAATAT	30	2.1646993E-6	45.000004	14
GAGCCGT	30	2.1646993E-6	45.000004	31
TTACGTA	30	2.1646993E-6	45.000004	18
CTCGACG	30	2.1646993E-6	45.000004	1
ATGCGAA	30	2.1646993E-6	45.000004	26
CGGGTTA	40	6.8102963E-9	45.0	6
CTTCGAA	20	7.032042E-4	45.0	31
AGCCGTA	25	3.8897742E-5	45.0	32
GGTACGA	20	7.032042E-4	45.0	8
GCGACTA	25	3.8897742E-5	45.0	28
CTCGTCG	20	7.032042E-4	45.0	1
ATTAGCG	45	3.8380676E-10	45.0	1
CACGCAA	25	3.8897742E-5	45.0	41
CGTCTCA	20	7.032042E-4	45.0	40
ATCGTCC	20	7.032042E-4	45.0	45
AAACGCG	20	7.032042E-4	45.0	1
TACGAGC	25	3.8897742E-5	45.0	28