Basic Statistics
Measure | Value |
---|---|
Filename | SRR3549852_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1364117 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC | 11485 | 0.8419365787538753 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCG | 10474 | 0.7678227014251711 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC | 9165 | 0.671863190620746 | No Hit |
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC | 6411 | 0.46997434970753976 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC | 5239 | 0.38405796570235545 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4118 | 0.30188026393630457 | No Hit |
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT | 3267 | 0.23949558578919553 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGGACAAT | 2706 | 0.1983700811587276 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCT | 2109 | 0.15460550671240078 | No Hit |
TCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC | 1886 | 0.13825793535305256 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGGACAATCGTA | 1582 | 0.11597245690802183 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTC | 1574 | 0.11538599694894207 | No Hit |
GAACTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCT | 1385 | 0.10153088041568283 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AACGTTA | 30 | 2.1658016E-6 | 45.000004 | 33 |
CGCTATA | 30 | 2.1658016E-6 | 45.000004 | 12 |
ATTACGC | 20 | 7.0337515E-4 | 45.0 | 25 |
ATATGCG | 20 | 7.0337515E-4 | 45.0 | 1 |
TGCGATC | 20 | 7.0337515E-4 | 45.0 | 42 |
CTCGACG | 20 | 7.0337515E-4 | 45.0 | 1 |
ACGTATC | 20 | 7.0337515E-4 | 45.0 | 36 |
ATACGAG | 20 | 7.0337515E-4 | 45.0 | 1 |
CGTCAAT | 20 | 7.0337515E-4 | 45.0 | 14 |
ATCGATT | 20 | 7.0337515E-4 | 45.0 | 14 |
CTACGCG | 25 | 3.8911916E-5 | 44.999996 | 1 |
TATTACG | 25 | 3.8911916E-5 | 44.999996 | 1 |
CCGAACG | 25 | 3.8911916E-5 | 44.999996 | 37 |
CGTTTTT | 2395 | 0.0 | 42.55741 | 1 |
TCGTGCG | 50 | 1.0822987E-9 | 40.499996 | 1 |
TGCGTAG | 90 | 0.0 | 40.0 | 1 |
TAATACG | 40 | 3.458863E-7 | 39.375 | 1 |
GATACGA | 40 | 3.458863E-7 | 39.375 | 11 |
GGATCGA | 80 | 0.0 | 39.375 | 8 |
GCCCGAT | 40 | 3.458863E-7 | 39.375 | 33 |