SRR3549849_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549849_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1800059
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4079	0.2266036835459282	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	3733	0.20738209136478303	No Hit
CCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	3489	0.19382698011565178	No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	1998	0.11099636178591925	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTAC	20	7.034351E-4	45.000004	29
CGTACCC	20	7.034351E-4	45.000004	31
CGAACCG	50	2.1827873E-11	45.0	2
AAACGCG	25	3.89169E-5	45.0	1
TCGAACG	25	3.89169E-5	45.0	1
CTATCGT	30	2.1661908E-6	44.999996	1
TACGCTA	30	2.1661908E-6	44.999996	17
TTGCGAG	150	0.0	40.500004	1
TGTCGCG	45	1.929402E-8	40.0	1
GCGTAAG	185	0.0	38.91892	1
CGCCTAG	35	6.2502586E-6	38.57143	33
CGTAAGG	310	0.0	38.467743	2
CGTTTTT	2585	0.0	38.03675	1
ACGCGTA	95	0.0	37.894737	24
ACTATCG	30	1.1401788E-4	37.499996	1
ATATCGC	30	1.1401788E-4	37.499996	34
CGTAGTG	30	1.1401788E-4	37.499996	27
GTATACG	60	1.5643309E-10	37.499996	1
CCGGTAT	30	1.1401788E-4	37.499996	42
ATAGACG	115	0.0	37.173912	1