SRR3549837_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549837_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1646381
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	12438	0.7554751907365307	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	7905	0.4801440249857111	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	6561	0.3985104298458255	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5488	0.3333371801545329	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	4933	0.2996268785900712	No Hit
ACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	3567	0.21665701924402672	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	2696	0.16375310453655625	No Hit
AGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	2354	0.14298027005899605	No Hit
GCCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	2271	0.13793890964485134	No Hit
ACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	2171	0.13186498143503844	No Hit
GGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	1888	0.11467576460126787	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC	1710	0.10386417238780088	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	35	1.2123564E-7	45.000004	1
AGTATCG	35	1.2123564E-7	45.000004	31
TACCCGT	25	3.891544E-5	45.0	36
TACCCGA	20	7.0341764E-4	45.0	19
GTCGATA	20	7.0341764E-4	45.0	3
CGTCTTA	20	7.0341764E-4	45.0	39
TAACGGC	20	7.0341764E-4	45.0	13
TAGCCGT	20	7.0341764E-4	45.0	44
CCGTAAC	20	7.0341764E-4	45.0	22
CGTAGAA	20	7.0341764E-4	45.0	24
AACGACG	20	7.0341764E-4	45.0	1
TCGTAGC	20	7.0341764E-4	45.0	18
CAGTCGT	20	7.0341764E-4	45.0	39
ACTCCGC	20	7.0341764E-4	45.0	42
CGCAATA	25	3.891544E-5	45.0	20
CGAAGTC	25	3.891544E-5	45.0	26
TTAGCCG	30	2.1660762E-6	44.999996	1
CGCGAAT	30	2.1660762E-6	44.999996	37
CGTTTTT	3605	0.0	42.56588	1
ATTCCGG	55	6.184564E-11	40.909092	2