SRR3549833_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549833_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1895161
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	12711	0.6707081878531692	No Hit
CCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	9350	0.49336177770648515	No Hit
CTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGCT	7202	0.38002048374781877	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7092	0.37421622753950723	No Hit
TCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	5631	0.2971251519000233	No Hit
CGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	4216	0.22246131067492417	No Hit
ACTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	3729	0.1967642854617629	TruSeq Adapter, Index 13 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	2767	0.14600342662180155	No Hit
AGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	2419	0.12764087061732488	No Hit
GCCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	2384	0.12579406182377117	No Hit
GGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	2047	0.10801193144012566	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTC	2018	0.10648171843975261	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCC	2002	0.10563746299127094	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	20	7.034446E-4	45.000004	26
GCGCGAA	25	3.8917668E-5	45.000004	17
CCGTGAT	20	7.034446E-4	45.000004	33
CCTACGG	20	7.034446E-4	45.000004	2
CACGAAA	25	3.8917668E-5	45.000004	42
TCGGCTA	20	7.034446E-4	45.000004	39
CGTTAGA	20	7.034446E-4	45.000004	22
CCCGTAG	20	7.034446E-4	45.000004	14
AACGCGC	20	7.034446E-4	45.000004	40
GTCGTAC	20	7.034446E-4	45.000004	8
TCCGTCA	25	3.8917668E-5	45.000004	29
CGTCGTC	25	3.8917668E-5	45.000004	34
ACCGTCG	20	7.034446E-4	45.000004	19
CGCAATT	25	3.8917668E-5	45.000004	31
CGACTCG	20	7.034446E-4	45.000004	2
CGCAACT	20	7.034446E-4	45.000004	42
TGTACCG	20	7.034446E-4	45.000004	2
TATCGCA	25	3.8917668E-5	45.000004	28
ATACCGG	50	2.1827873E-11	45.000004	2
GCGTAAT	20	7.034446E-4	45.000004	9