SRR3549823_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549823_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1723857
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	8059	0.4674981741524964	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7457	0.4325764840123049	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	6881	0.3991630396256767	No Hit
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT	5041	0.29242564783505826	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	2777	0.16109224837094957	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTG	2635	0.1528549061784127	No Hit
ACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	2088	0.12112373590152781	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGC	30	2.1661363E-6	45.000004	45
CGCGATA	30	2.1661363E-6	45.000004	26
CGTTAGT	30	2.1661363E-6	45.000004	35
AATCTCG	35	1.2123928E-7	45.000004	18
ATCTCGC	20	7.0342683E-4	45.0	14
GTCGAAC	40	6.8193913E-9	45.0	34
CGAGTAA	20	7.0342683E-4	45.0	20
ACGCATT	20	7.0342683E-4	45.0	23
CTATCGG	20	7.0342683E-4	45.0	44
CGTCTAT	20	7.0342683E-4	45.0	16
GCGCATA	25	3.8916198E-5	45.0	28
TACGACA	25	3.8916198E-5	45.0	20
CCGAATA	20	7.0342683E-4	45.0	33
TATCGCG	75	0.0	45.0	1
GACTCGA	25	3.8916198E-5	45.0	22
TCGCGGA	20	7.0342683E-4	45.0	21
TACGTCA	20	7.0342683E-4	45.0	23
TCTATCG	20	7.0342683E-4	45.0	21
ATCGGGT	65	0.0	44.999996	4
CGTTTTT	4035	0.0	41.542747	1