SRR3549819_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549819_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	323331
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	998	0.30866202127231845	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	619	0.19144468052862237	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGACGG	30	2.1606447E-6	45.000004	2
GTTTCGC	20	7.025757E-4	45.0	17
GTTCGCG	25	3.8845657E-5	45.0	11
TCTCGTA	25	3.8845657E-5	45.0	28
AACGAGC	45	3.8380676E-10	45.0	15
TCGTACG	25	3.8845657E-5	45.0	30
CGTTTCG	20	7.025757E-4	45.0	16
TCGCGTT	25	3.8845657E-5	45.0	13
CGCTTAG	20	7.025757E-4	45.0	2
GTACGAG	20	7.025757E-4	45.0	1
CGTTTTA	195	0.0	42.69231	1
AGTACGG	50	1.0768417E-9	40.5	2
TGCACGG	50	1.0768417E-9	40.5	2
CGTTTTT	350	0.0	39.857143	1
TACGAAT	40	3.447949E-7	39.375	12
CGAATAT	40	3.447949E-7	39.375	14
GCTACGA	40	3.447949E-7	39.375	10
AGCTACG	40	3.447949E-7	39.375	9
AGGCGAT	195	0.0	39.23077	7
ACCTATG	35	6.234368E-6	38.571426	34