SRR3549817_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549817_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	312763
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1210	0.38687440649949006	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	657	0.21006321080178922	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG	336	0.10742958725936252	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGCG	20	7.025405E-4	45.0	5
TAGCGAA	20	7.025405E-4	45.0	1
CGACCCG	20	7.025405E-4	45.0	10
GGATACC	25	3.884273E-5	45.0	8
CGACAAG	25	3.884273E-5	45.0	2
TCGATGG	40	6.7884685E-9	45.0	2
TCTACGG	20	7.025405E-4	45.0	2
TCGTCAA	20	7.025405E-4	45.0	27
GCGATAC	20	7.025405E-4	45.0	9
CGTACAG	20	7.025405E-4	45.0	2
CGCACGG	20	7.025405E-4	45.0	2
ACCCGCT	25	3.884273E-5	45.0	12
TTCGCAG	20	7.025405E-4	45.0	2
AGGCGAT	140	0.0	43.392857	7
CCTCGTC	140	0.0	41.785713	36
TCGTCCC	140	0.0	41.785713	38
ACAACGA	55	6.002665E-11	40.90909	13
CACAACG	55	6.002665E-11	40.90909	12
CGTTTTA	200	0.0	40.5	1
CGTTATT	90	0.0	40.0	1