SRR3549816_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549816_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	253790
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	958	0.37747744197958943	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	598	0.23562788131920093	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAAT	60	0.0	45.000004	12
CGTATGG	20	7.022889E-4	45.0	2
TAAACGC	25	3.8821883E-5	45.0	20
AAGCGAT	20	7.022889E-4	45.0	6
AGCGATA	20	7.022889E-4	45.0	7
TCTTTCG	20	7.022889E-4	45.0	22
GTCCCGA	20	7.022889E-4	45.0	38
TAGGCGA	25	3.8821883E-5	45.0	6
TAGGATC	40	6.7793735E-9	45.0	6
TTCCTAT	20	7.022889E-4	45.0	43
AAGCTAG	20	7.022889E-4	45.0	2
TGCGTAG	25	3.8821883E-5	45.0	2
AGGCGAT	110	0.0	42.954544	7
AACACGT	95	0.0	42.63158	41
ACACGTG	90	0.0	42.5	42
CGTTGAT	75	0.0	42.0	25
CACGACC	75	0.0	42.0	27
ATCGTTG	75	0.0	42.0	23
GTCAAGC	75	0.0	42.0	16
CGACCAA	70	0.0	41.785717	29