SRR3549814_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549814_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	349068
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1459	0.4179701376236149	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	881	0.25238635452118213	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTACGA	75	0.0	45.000004	10
CGCGGTA	20	7.026531E-4	45.0	31
TAGACGG	25	3.8852064E-5	45.0	2
TCGATAG	20	7.026531E-4	45.0	2
CCCCGAC	20	7.026531E-4	45.0	42
TTAACGT	20	7.026531E-4	45.0	17
TGTAACG	20	7.026531E-4	45.0	1
TACGTAG	20	7.026531E-4	45.0	2
CGTTTTA	230	0.0	44.021736	1
CGTTATT	110	0.0	42.954544	1
TAACGGG	90	0.0	42.5	3
AGGACCG	80	0.0	42.1875	7
TACGAAT	80	0.0	42.1875	12
CGAATAT	80	0.0	42.1875	14
CGCATGG	50	1.0768417E-9	40.5	2
CTCGATC	50	1.0768417E-9	40.5	16
CTACGAA	85	0.0	39.705883	11
GGCCTAT	80	0.0	39.375	8
TGACTAT	80	0.0	39.375	23
TTAACGG	35	6.235796E-6	38.571426	2