SRR3549804_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549804_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	744380
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTC	2245	0.3015932722534189	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2170	0.29151777318036487	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCG	1890	0.25390257664096294	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGC	1849	0.2483946371476934	No Hit
GCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	1269	0.17047744431607512	No Hit
CCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	1017	0.13662376743061339	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	30	2.1644664E-6	45.000004	27
TATACGG	30	2.1644664E-6	45.000004	2
CACCCGT	60	0.0	45.000004	38
CTTAACG	20	7.0316833E-4	45.0	1
ACGCCTA	20	7.0316833E-4	45.0	43
CCGTCGA	25	3.889477E-5	45.0	41
TCTACGA	20	7.0316833E-4	45.0	36
CTACGAT	20	7.0316833E-4	45.0	37
TTGCGTC	20	7.0316833E-4	45.0	16
TCGGTAC	25	3.889477E-5	45.0	36
ACGACGT	20	7.0316833E-4	45.0	32
ATAACGG	65	0.0	41.538464	2
TTAACGG	50	1.0804797E-9	40.5	2
AATGCGG	180	0.0	40.0	2
ATACGAG	45	1.9266736E-8	40.0	1
TAACGGG	175	0.0	39.857143	3
CGTAAGG	80	0.0	39.375	2
TCGTCGG	35	6.245322E-6	38.57143	1
CATCGGT	35	6.245322E-6	38.57143	24
TACTACG	35	6.245322E-6	38.57143	1