SRR3549802_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549802_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	797247
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGC	2683	0.33653309451148766	TruSeq Adapter, Index 13 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGC	2591	0.3249933834809037	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGCT	2255	0.2828483518909447	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1390	0.1743499818751278	No Hit
TCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGC	1178	0.14775847384812987	TruSeq Adapter, Index 13 (95% over 21bp)
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	970	0.1216686923876791	No Hit
ACTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCCGTCTTCTGC	839	0.10523714733326059	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCTTCCCTCGTATGCC	829	0.10398283091689277	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	45	3.8380676E-10	45.0	1
CTTCGAC	20	7.031985E-4	45.0	21
TCGTTGA	25	3.8897262E-5	45.0	24
TCGTTAC	25	3.8897262E-5	45.0	37
CGAAATC	20	7.031985E-4	45.0	15
ATAATCG	25	3.8897262E-5	45.0	24
CGTTGAT	25	3.8897262E-5	45.0	25
ATTCGCG	20	7.031985E-4	45.0	1
GCGCATA	20	7.031985E-4	45.0	25
ATCGTTA	25	3.8897262E-5	45.0	36
GTTAACG	20	7.031985E-4	45.0	1
TGTTCGA	20	7.031985E-4	45.0	36
ACGTGCG	25	3.8897262E-5	45.0	1
CCGACAC	20	7.031985E-4	45.0	24
CATCGTA	25	3.8897262E-5	45.0	32
CGTAATC	20	7.031985E-4	45.0	30
CGTAAGA	20	7.031985E-4	45.0	45
TATAGCG	25	3.8897262E-5	45.0	1
ATGCGAT	25	3.8897262E-5	45.0	11
TACTACG	20	7.031985E-4	45.0	30