SRR3549797_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549797_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	691608
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1619	0.2340921446831153	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGC	1332	0.1925946489919145	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCC	892	0.12897479497056136	No Hit
GCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGC	870	0.1257938022694937	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	839	0.12131149437253474	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	782	0.11306983146522308	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCCG	25	3.8891885E-5	45.0	1
TAGCGAT	20	7.031336E-4	45.0	40
ATCCGGC	25	3.8891885E-5	45.0	35
TACGCTA	25	3.8891885E-5	45.0	39
CATACGT	20	7.031336E-4	45.0	34
ACGTCCA	25	3.8891885E-5	45.0	15
TACTACG	25	3.8891885E-5	45.0	36
TCGACAA	50	2.1827873E-11	45.0	19
TAAGACG	25	3.8891885E-5	45.0	16
AATCCGG	30	2.1642427E-6	44.999996	2
TACGTAG	30	2.1642427E-6	44.999996	1
CTTACGT	30	2.1642427E-6	44.999996	22
CTACGTA	90	0.0	42.5	21
TACGTAT	90	0.0	42.5	22
TCGATGG	65	0.0	41.53846	2
TTAATCG	100	0.0	40.5	20
CCCGGTT	50	1.0804797E-9	40.5	19
CCTACGT	95	0.0	40.263153	20
TACGAAT	95	0.0	40.263153	12
CGAATAT	95	0.0	40.263153	14