SRR3549796_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549796_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	426839
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	2136	0.5004228760727113	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTC	2067	0.48425753035687924	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCG	2030	0.4755891565672302	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGC	1959	0.4589552501060119	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	1529	0.35821468984792865	No Hit
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	1266	0.29659895182961254	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1210	0.28347925095879245	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC	728	0.1705561113206619	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	719	0.16844758796642295	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTGCCAT	531	0.12440287790009817	No Hit
ACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	507	0.11878014895546096	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	482	0.11292313963813054	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCT	468	0.10964321442042549	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	465	0.10894037330234584	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	427	0.1000377191400036	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAATCG	60	0.0	45.000004	20
CGCGGGT	30	2.1622836E-6	45.000004	4
TGATCGG	20	7.028297E-4	45.0	21
TCGTTTG	20	7.028297E-4	45.0	1
TCGCACA	20	7.028297E-4	45.0	24
CGTATGG	20	7.028297E-4	45.0	2
AATCAGC	20	7.028297E-4	45.0	13
GGTCGCA	20	7.028297E-4	45.0	22
CATGCGG	45	3.8380676E-10	45.0	2
CCCTACG	25	3.8866703E-5	45.0	31
CCGGCAT	20	7.028297E-4	45.0	3
GACGTTA	20	7.028297E-4	45.0	10
TTTCGAC	25	3.8866703E-5	45.0	24
CGGCATT	20	7.028297E-4	45.0	4
TAGCGAT	20	7.028297E-4	45.0	33
CACGCCC	20	7.028297E-4	45.0	13
ATTCGAT	25	3.8866703E-5	45.0	14
ATAGACG	20	7.028297E-4	45.0	1
TACGGGT	35	1.209537E-7	45.0	4
TAGTTAG	25	3.8866703E-5	45.0	1