##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549796_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 426839 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.31754361714839 33.0 31.0 34.0 30.0 34.0 2 32.42699706446693 34.0 31.0 34.0 30.0 34.0 3 32.44408547485117 34.0 31.0 34.0 30.0 34.0 4 35.954472295174526 37.0 35.0 37.0 35.0 37.0 5 35.99739714505938 37.0 35.0 37.0 35.0 37.0 6 36.018027874678744 37.0 35.0 37.0 35.0 37.0 7 36.15633529269818 37.0 36.0 37.0 35.0 37.0 8 35.78631287206652 37.0 35.0 37.0 35.0 37.0 9 37.678265106984135 39.0 38.0 39.0 35.0 39.0 10 37.60853155405199 39.0 37.0 39.0 35.0 39.0 11 37.51275539489128 39.0 37.0 39.0 35.0 39.0 12 37.29793200715024 39.0 37.0 39.0 35.0 39.0 13 37.16721293040233 39.0 37.0 39.0 34.0 39.0 14 38.40795709857815 40.0 38.0 41.0 34.0 41.0 15 38.473785197697495 40.0 38.0 41.0 34.0 41.0 16 38.57324658712067 40.0 38.0 41.0 35.0 41.0 17 38.57354412319399 40.0 38.0 41.0 35.0 41.0 18 38.56739894901825 40.0 37.0 41.0 35.0 41.0 19 38.56843446826555 40.0 37.0 41.0 35.0 41.0 20 38.45839063440782 40.0 37.0 41.0 35.0 41.0 21 38.414545062658284 40.0 37.0 41.0 34.0 41.0 22 38.38073606207493 40.0 37.0 41.0 34.0 41.0 23 38.34584702897345 40.0 37.0 41.0 34.0 41.0 24 38.29424209128032 40.0 37.0 41.0 34.0 41.0 25 38.23502069867093 40.0 36.0 41.0 34.0 41.0 26 38.21108661579659 40.0 36.0 41.0 34.0 41.0 27 38.16252263734101 40.0 36.0 41.0 34.0 41.0 28 38.1259866132195 40.0 36.0 41.0 34.0 41.0 29 38.12497217920574 40.0 36.0 41.0 34.0 41.0 30 38.04643202706407 40.0 36.0 41.0 34.0 41.0 31 37.981852642331184 40.0 36.0 41.0 34.0 41.0 32 37.87248119314308 40.0 36.0 41.0 34.0 41.0 33 37.826742635982185 40.0 36.0 41.0 34.0 41.0 34 37.751829144009804 40.0 36.0 41.0 34.0 41.0 35 37.685525455733895 40.0 36.0 41.0 34.0 41.0 36 37.63147697375357 40.0 35.0 41.0 34.0 41.0 37 37.53844423775709 40.0 35.0 41.0 33.0 41.0 38 37.4443923821394 40.0 35.0 41.0 33.0 41.0 39 37.41114331164678 40.0 35.0 41.0 33.0 41.0 40 37.32721471093316 40.0 35.0 41.0 33.0 41.0 41 37.28074754181319 40.0 35.0 41.0 33.0 41.0 42 37.25241835914713 40.0 35.0 41.0 33.0 41.0 43 37.168004798062036 39.0 35.0 41.0 33.0 41.0 44 37.1298053832944 39.0 35.0 41.0 33.0 41.0 45 37.06948755854081 39.0 35.0 41.0 33.0 41.0 46 36.95180384172955 39.0 35.0 41.0 33.0 41.0 47 36.889958508945995 39.0 35.0 41.0 32.0 41.0 48 36.88448103383243 39.0 35.0 41.0 33.0 41.0 49 36.80605333626965 39.0 35.0 41.0 32.0 41.0 50 36.72816214076033 39.0 35.0 41.0 32.0 41.0 51 35.946670758763844 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 4.0 12 8.0 13 8.0 14 11.0 15 16.0 16 18.0 17 36.0 18 87.0 19 122.0 20 217.0 21 433.0 22 690.0 23 1021.0 24 1402.0 25 1971.0 26 2443.0 27 3060.0 28 3290.0 29 3728.0 30 4648.0 31 5963.0 32 8074.0 33 11672.0 34 24180.0 35 41467.0 36 26810.0 37 40726.0 38 71551.0 39 172789.0 40 390.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.179746930341416 21.27757772837065 23.475127624233025 12.067547717054907 2 31.063000335020934 26.573251272728125 23.60445038995968 18.75929800229126 3 31.982316517469116 25.82636544458215 26.328662563636406 15.862655474312328 4 29.50948718369221 23.930802949121333 27.765972650109294 18.793737217077165 5 26.321165591710223 29.468488118470898 24.28034926517961 19.929997024639267 6 25.407940698952064 34.739562223695586 24.16016343398799 15.692333643364359 7 76.17977738678987 6.717989686977995 11.731355382240142 5.3708775439919965 8 75.9089492759565 7.574050168799008 10.174562305693716 6.342438249550768 9 69.2019707664951 8.446510276708548 12.740635227802521 9.610883728993837 10 43.354520088370556 22.510829610227745 19.516023606090354 14.618626695311345 11 32.52069281391813 24.14844941535333 24.203505302936236 19.127352467792306 12 30.302760525631445 21.4380597836655 28.30060046059521 19.95857923010784 13 24.007881191737397 26.90639796269788 29.51721843599109 19.568502409573632 14 19.072062299836706 30.081131293063663 28.526915300616864 22.31989110648277 15 18.036308772159995 26.313668619784043 35.32807451990095 20.32194808815502 16 19.032703197224247 25.48736174529506 32.83954840115359 22.640386656327095 17 19.95201937967243 25.665180548169214 28.526915300616864 25.855884771541493 18 21.20495081283575 25.89828951899897 30.016001349454946 22.880758318710335 19 23.327530989436298 26.77262386989005 27.282417960870493 22.61742717980316 20 25.93624293937527 26.22112787257022 28.6396041598823 19.203025028172217 21 23.008909682573524 27.722865061533742 28.64428976733616 20.623935488556576 22 21.610958698713098 24.94359700027411 27.420409100386795 26.025035200625997 23 21.76253809984561 27.119593101848704 27.556525996921554 23.56134280138413 24 22.539411815696315 24.305182984685093 29.706985537872594 23.448419661745998 25 20.172477210376748 27.495378819648625 27.95269410714579 24.379449862828842 26 19.988098557067186 27.94426001372883 29.223196568261102 22.844444860942883 27 21.96495634185255 27.92903178950377 28.920272046368773 21.18573982227491 28 19.511103718263794 27.318262857892556 30.72188811237961 22.44874531146404 29 21.061336944374812 23.514955287590873 32.03971520877895 23.38399255925536 30 22.040394621859765 26.570205627883116 29.322062885537637 22.067336864719483 31 24.276366498843828 26.225110638906003 25.354993334723396 24.143529527526773 32 23.152054990289077 26.965670896989263 28.03984640578766 21.842427706933996 33 24.060125714847988 26.46782510501618 26.176848882131203 23.295200298004634 34 20.513355152645378 25.218642157815946 28.9261290556861 25.341873633852575 35 20.911397505851152 24.03786907944213 29.50081880990256 25.54991460480415 36 23.582193754553824 26.506949927255945 27.984087677086677 21.926768641103557 37 21.533646175724336 25.958031014035736 30.97608231675175 21.532240493488178 38 22.41055761071505 26.847827869524576 25.849793481851467 24.891821037908908 39 23.244361457130207 24.483001787559246 28.89473548574521 23.377901269565342 40 22.7713493846626 23.175951588303786 29.549080566677365 24.503618460356247 41 19.277526186688657 25.437928586656795 27.615564650840245 27.6689805758143 42 21.401746325898056 24.544617525577557 29.206328381427188 24.847307767097195 43 23.67004889431378 24.204910985172397 28.812034514184504 23.31300560632932 44 22.184711331438788 24.318302685555913 28.50114445962061 24.995841523384694 45 22.472173348733364 23.880901229737674 27.14442682135419 26.502498600174775 46 23.13823244830018 25.49204735274893 27.593308015434392 23.776412183516502 47 20.138740836708923 24.18851135908387 31.883918760937963 23.788829043269242 48 21.190425429728773 22.60360463781426 30.293389310723718 25.912580621733255 49 21.228378850105077 22.69263117943768 32.07462298431024 24.004366986147 50 21.01541799132694 23.19750538259156 30.42411775868653 25.362958867394962 51 20.14155220118124 23.095827700842705 27.05493171898538 29.70768837899067 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 217.0 1 485.0 2 753.0 3 1455.0 4 2157.0 5 1511.0 6 865.0 7 838.5 8 812.0 9 804.0 10 796.0 11 797.0 12 798.0 13 842.0 14 886.0 15 894.0 16 902.0 17 876.5 18 851.0 19 950.0 20 1049.0 21 1555.0 22 2061.0 23 1933.0 24 1805.0 25 2099.0 26 2915.0 27 3437.0 28 4028.0 29 4619.0 30 5805.5 31 6992.0 32 7784.0 33 8576.0 34 9989.5 35 11403.0 36 11559.0 37 11715.0 38 12305.5 39 12896.0 40 15486.5 41 18077.0 42 20798.5 43 23520.0 44 26890.5 45 30261.0 46 37777.0 47 45293.0 48 45727.0 49 46161.0 50 45077.5 51 43994.0 52 37560.5 53 31127.0 54 26823.5 55 22520.0 56 20203.0 57 17886.0 58 16435.0 59 14984.0 60 15020.0 61 15056.0 62 13550.5 63 12045.0 64 10816.5 65 9588.0 66 8097.5 67 6607.0 68 6049.5 69 5492.0 70 4394.5 71 3297.0 72 2690.0 73 2083.0 74 1811.5 75 1127.0 76 714.0 77 530.0 78 346.0 79 232.0 80 118.0 81 115.0 82 112.0 83 71.5 84 31.0 85 17.0 86 3.0 87 1.5 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 426839.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.536342667142204 #Duplication Level Percentage of deduplicated Percentage of total 1 71.01278053989104 19.554322586930073 2 11.675778404889874 6.430164701253331 3 4.497814736796816 3.7156010353727753 4 2.182192185112769 2.4035836709930005 5 1.2823985495461776 1.765628294807484 6 0.7952156063689042 1.313839765874005 7 0.6141053112790344 1.1837149999564063 8 0.48598404679760343 1.0705778594706625 9 0.4296124861699371 1.0646960969932453 >10 6.343400462761693 44.32680295776571 >50 0.6021404738045424 10.031469178310775 >100 0.06918209699030912 3.686570214756791 >500 0.0034163998513732897 0.5844419128338518 >1k 0.005978699739903257 2.868586724681887 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC 2136 0.5004228760727113 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTC 2067 0.48425753035687924 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCG 2030 0.4755891565672302 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGC 1959 0.4589552501060119 No Hit CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC 1529 0.35821468984792865 No Hit CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT 1266 0.29659895182961254 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1210 0.28347925095879245 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC 728 0.1705561113206619 No Hit TCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC 719 0.16844758796642295 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTGCCAT 531 0.12440287790009817 No Hit ACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC 507 0.11878014895546096 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 482 0.11292313963813054 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCT 468 0.10964321442042549 No Hit CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA 465 0.10894037330234584 No Hit GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT 427 0.1000377191400036 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.30573588636464805 0.0 2 0.0 0.0 0.0 1.4895546095834729 0.0 3 0.0 0.0 0.0 1.987634681929252 0.0 4 2.3428037269321688E-4 0.0 0.0 2.6656420805034218 0.0 5 2.3428037269321688E-4 0.0 0.0 4.787285135613193 0.0 6 2.3428037269321688E-4 0.0 0.0 5.683641841537441 0.0 7 2.3428037269321688E-4 0.0 0.0 6.703932864616401 0.0 8 2.3428037269321688E-4 0.0 0.0 8.182007735937907 0.0 9 2.3428037269321688E-4 0.0 0.0 8.742874948165468 0.0 10 2.3428037269321688E-4 0.0 0.0 10.440939089445903 0.0 11 2.3428037269321688E-4 0.0 0.0 12.291519753349624 0.0 12 2.3428037269321688E-4 0.0 0.0 14.039719894386408 0.0 13 2.3428037269321688E-4 0.0 0.0 14.595667218787412 0.0 14 2.3428037269321688E-4 0.0 0.0 14.81846785321866 0.0 15 2.3428037269321688E-4 0.0 0.0 15.313268000346735 0.0 16 2.3428037269321688E-4 0.0 0.0 16.148711809370745 0.0 17 2.3428037269321688E-4 0.0 0.0 17.10598141219523 0.0 18 2.3428037269321688E-4 0.0 0.0 18.175705593912458 0.0 19 2.3428037269321688E-4 0.0 0.0 18.887215085781758 0.0 20 2.3428037269321688E-4 0.0 0.0 19.474087419378268 0.0 21 2.3428037269321688E-4 0.0 0.0 20.191922481310282 0.0 22 2.3428037269321688E-4 0.0 0.0 20.940213991692417 0.0 23 2.3428037269321688E-4 0.0 0.0 21.673511558222188 0.0 24 2.3428037269321688E-4 0.0 0.0 22.26225813480024 0.0 25 2.3428037269321688E-4 0.0 0.0 22.80532003870312 0.0 26 2.3428037269321688E-4 0.0 0.0 23.30855427924815 0.0 27 2.3428037269321688E-4 0.0 0.0 23.79445177221388 0.0 28 2.3428037269321688E-4 0.0 0.0 24.27824074182537 0.0 29 2.3428037269321688E-4 0.0 0.0 24.7505499731749 0.0 30 2.3428037269321688E-4 0.0 0.0 25.336485185280633 0.0 31 2.3428037269321688E-4 0.0 0.0 25.8315196127814 0.0 32 2.3428037269321688E-4 0.0 0.0 26.37411295593889 0.0 33 2.3428037269321688E-4 0.0 0.0 26.815731458465603 0.0 34 2.3428037269321688E-4 0.0 0.0 27.282417960870493 0.0 35 2.3428037269321688E-4 0.0 0.0 27.78705788365168 0.0 36 2.3428037269321688E-4 0.0 0.0 28.272955376617414 0.0 37 2.3428037269321688E-4 0.0 0.0 28.778766701262068 0.0 38 4.6856074538643376E-4 0.0 0.0 29.206796942172577 0.0 39 4.6856074538643376E-4 0.0 0.0 29.68566602395751 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAATCG 60 0.0 45.000004 20 CGCGGGT 30 2.1622836E-6 45.000004 4 TGATCGG 20 7.028297E-4 45.0 21 TCGTTTG 20 7.028297E-4 45.0 1 TCGCACA 20 7.028297E-4 45.0 24 CGTATGG 20 7.028297E-4 45.0 2 AATCAGC 20 7.028297E-4 45.0 13 GGTCGCA 20 7.028297E-4 45.0 22 CATGCGG 45 3.8380676E-10 45.0 2 CCCTACG 25 3.8866703E-5 45.0 31 CCGGCAT 20 7.028297E-4 45.0 3 GACGTTA 20 7.028297E-4 45.0 10 TTTCGAC 25 3.8866703E-5 45.0 24 CGGCATT 20 7.028297E-4 45.0 4 TAGCGAT 20 7.028297E-4 45.0 33 CACGCCC 20 7.028297E-4 45.0 13 ATTCGAT 25 3.8866703E-5 45.0 14 ATAGACG 20 7.028297E-4 45.0 1 TACGGGT 35 1.209537E-7 45.0 4 TAGTTAG 25 3.8866703E-5 45.0 1 >>END_MODULE