SRR3549791_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549791_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	788263
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4734	0.6005609802819617	No Hit
GCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC	1567	0.1987915200891073	No Hit
CTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGCT	1417	0.179762338204381	No Hit
CCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC	875	0.1110035609942367	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCC	834	0.10580225127907816	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCG	20	7.031937E-4	45.0	45
GTCGCAA	25	3.8896866E-5	45.0	32
ACACGTC	20	7.031937E-4	45.0	11
CGTTCAC	20	7.031937E-4	45.0	39
CACTCGA	40	6.8102963E-9	45.0	44
GGGCGTA	25	3.8896866E-5	45.0	7
TATAGCG	20	7.031937E-4	45.0	1
ACGTACG	25	3.8896866E-5	45.0	1
CGGTCCA	20	7.031937E-4	45.0	20
TGTACCG	20	7.031937E-4	45.0	1
GCGTACG	50	2.1827873E-11	45.0	1
ATCTCGA	30	2.164632E-6	44.999996	35
ACGTTAC	30	2.164632E-6	44.999996	34
TTATGCG	30	2.164632E-6	44.999996	1
CGAATAT	100	0.0	42.75	14
TTAGGCG	55	6.002665E-11	40.909092	1
TACGAAT	110	0.0	40.909092	12
CGTTTTT	2925	0.0	40.692307	1
CGACGTT	45	1.9270374E-8	40.0	27
AGTAACG	45	1.9270374E-8	40.0	1