SRR3549784_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549784_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	769327
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	1888	0.24540929929665797	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1749	0.2273415595708977	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGC	1522	0.19783525081012365	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCG	1463	0.1901662102071031	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1257	0.16338955996604826	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGC	1188	0.15442068197268521	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTC	1135	0.14753154380387012	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1041	0.13531307233465092	No Hit
CTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCCGTCTTCTGCT	987	0.1282939504268016	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	977	0.12699411303645913	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGACAATCGTATGCC	832	0.10814647087649336	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	815	0.10593674731291115	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	794	0.10320708879319197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGGT	20	7.0318294E-4	45.000004	3
CACGGTA	20	7.0318294E-4	45.000004	15
ACGTGCC	20	7.0318294E-4	45.000004	40
CGAATAT	160	0.0	45.000004	14
ATAACGG	20	7.0318294E-4	45.000004	2
ACTCCGT	20	7.0318294E-4	45.000004	42
CGACTAG	20	7.0318294E-4	45.000004	31
CTAGCGT	20	7.0318294E-4	45.000004	29
TCCGGTA	20	7.0318294E-4	45.000004	31
AGATCGG	25	3.889598E-5	45.0	2
GCTACGA	175	0.0	43.714287	10
ATGACGG	95	0.0	42.63158	2
TCGGGAT	70	0.0	41.785713	5
TAGCACG	60	3.6379788E-12	41.250004	1
GCGTAAG	60	3.6379788E-12	41.250004	1
GACCTAT	160	0.0	40.781254	33
CGAAAGG	180	0.0	40.0	2
ATACCGG	45	1.9268555E-8	40.0	2
CGGTAGT	80	0.0	39.375004	12
TCGGCGT	175	0.0	38.571426	4