SRR3549783_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549783_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1016650
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5908	0.5811242807259136	No Hit
CTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGCT	1504	0.1479368514237938	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGC	1384	0.1361333792357252	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1057	0.10396891752323809	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGGGC	35	1.211738E-7	45.000004	4
GCGCGAT	20	7.0329016E-4	45.0	40
GTAAGCG	50	2.1827873E-11	45.0	1
TATCGTC	20	7.0329016E-4	45.0	32
TCGCGAA	20	7.0329016E-4	45.0	42
AATCGCG	20	7.0329016E-4	45.0	1
GTCGCGC	30	2.165254E-6	44.999996	38
TCGTGCG	30	2.165254E-6	44.999996	1
CGTTTTT	3030	0.0	42.549507	1
GCCGATA	60	3.6379788E-12	41.249996	9
ACGGGTA	110	0.0	40.909092	5
AGTAACG	55	6.184564E-11	40.909092	1
TAATGCG	50	1.0804797E-9	40.5	1
CGACAGG	160	0.0	39.375	2
ACACGAA	35	6.2475756E-6	38.57143	23
TACGCGG	105	0.0	38.57143	2
GCGTACG	35	6.2475756E-6	38.57143	1
AACACGT	165	0.0	38.181816	41
CGGACGG	95	0.0	37.894737	2
TCGGCGT	180	0.0	37.5	4