SRR3549781_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549781_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	738810
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1788	0.2420108011532058	No Hit
GCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	1327	0.17961316170598665	No Hit
CCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	1118	0.15132442711928643	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	1057	0.1430679064982878	No Hit
CTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGCT	1033	0.13981943936871455	Illumina Single End Adapter 1 (95% over 21bp)
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	853	0.11545593589691532	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	814	0.1101771768113588	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACACGG	30	2.1644446E-6	45.000004	2
CGGGTAC	25	3.8894483E-5	45.0	6
CGATTCT	25	3.8894483E-5	45.0	10
TAACGAC	20	7.0316484E-4	45.0	34
ACGATGT	20	7.0316484E-4	45.0	16
ACGATAC	20	7.0316484E-4	45.0	40
GCCGACC	25	3.8894483E-5	45.0	14
GTATACG	20	7.0316484E-4	45.0	25
TTACGAG	25	3.8894483E-5	45.0	1
GATTACG	25	3.8894483E-5	45.0	1
ACGGTTG	40	6.8084773E-9	45.0	1
GTTACGG	70	0.0	41.785713	2
CTACGAA	130	0.0	41.538464	11
CGCATGG	100	0.0	40.5	2
ACGGGTA	50	1.0804797E-9	40.5	5
TTAATCG	45	1.9266736E-8	40.0	20
TTACGGG	175	0.0	39.857143	3
CGAATAT	130	0.0	39.807693	14
GCGATTC	40	3.455989E-7	39.375	9
ATCGGGT	40	3.455989E-7	39.375	3