SRR3549770_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549770_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	464164
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1015	0.21867271050749304	No Hit
GCTGTCTCTTATACACATCTGACGCAGACGAGATCGTATGCCGTCTTCTGC	671	0.14456097413845106	Illumina Single End Adapter 2 (95% over 22bp)
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	554	0.11935436612921296	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	25	3.8871993E-5	45.0	1
AATCACG	25	3.8871993E-5	45.0	22
TAGCGAA	25	3.8871993E-5	45.0	1
ATCACGT	20	7.028936E-4	45.0	11
ATCCGTA	20	7.028936E-4	45.0	31
CCGTACC	20	7.028936E-4	45.0	44
ACGGCAT	25	3.8871993E-5	45.0	38
CGAATAT	20	7.028936E-4	45.0	14
CGTACCG	20	7.028936E-4	45.0	45
CGTAACA	20	7.028936E-4	45.0	34
ACGTAAG	20	7.028936E-4	45.0	1
CGGTCAA	20	7.028936E-4	45.0	33
CGACTCG	20	7.028936E-4	45.0	43
CGATAGT	20	7.028936E-4	45.0	31
AGTACGG	55	1.8189894E-12	45.0	2
TAGTACG	20	7.028936E-4	45.0	26
AACGTCG	30	2.1626947E-6	44.999996	1
TAGGGCG	130	0.0	41.53846	5
ACGGGAC	55	6.002665E-11	40.909092	5
CGTTAGG	45	1.924127E-8	40.0	2