SRR3549764_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549764_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	446485
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	892	0.19978274746072097	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	508	0.11377761850902045	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCT	25	3.8869606E-5	45.0	9
CCGATGT	20	7.028647E-4	45.0	11
CTAACGG	25	3.8869606E-5	45.0	2
CATACGG	25	3.8869606E-5	45.0	2
TACTCGT	20	7.028647E-4	45.0	31
ATGCGAT	20	7.028647E-4	45.0	14
AGTACGG	65	0.0	44.999996	2
AGGCGAT	180	0.0	42.5	7
CGTTTTA	205	0.0	41.70732	1
TTTCGAC	45	1.9237632E-8	40.0	24
ATAGCGG	40	3.4518962E-7	39.375	2
ACACGCG	120	0.0	39.374996	36
CTATGCG	35	6.2397066E-6	38.57143	1
CGAACGG	35	6.2397066E-6	38.57143	2
TAAGGCG	35	6.2397066E-6	38.57143	5
CTACGAA	90	0.0	37.5	11
TACGAAT	90	0.0	37.5	12
TATGCGG	60	1.546141E-10	37.499996	2
TCAGCGT	30	1.1388041E-4	37.499996	33
CGCTAGA	30	1.1388041E-4	37.499996	12