SRR3549757_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549757_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	504409
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2189	0.4339732241097998	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1254	0.24860777662571448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	55	1.8189894E-12	45.000004	28
TATCGCG	35	1.2101191E-7	45.000004	32
CTTCGTA	20	7.029519E-4	45.0	44
CCGGATA	20	7.029519E-4	45.0	21
GAGACCG	25	3.8876824E-5	45.0	6
GTATCCG	20	7.029519E-4	45.0	29
TCCCGAT	20	7.029519E-4	45.0	39
CGCGTAA	25	3.8876824E-5	45.0	31
TCGAATA	20	7.029519E-4	45.0	1
TCGGTAC	20	7.029519E-4	45.0	37
CGAATAT	120	0.0	44.999996	14
GCTACGA	125	0.0	43.2	10
CGTTATT	185	0.0	42.567566	1
AGGCGAT	355	0.0	41.830986	7
CGTTTTA	495	0.0	41.363636	1
ATGATCG	60	3.6379788E-12	41.249996	27
TGTACGG	60	3.6379788E-12	41.249996	2
TAGGCGA	105	0.0	40.714287	6
CTACGAA	135	0.0	40.0	11
TACGAAT	135	0.0	40.0	12