SRR3549752_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549752_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	460654
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	2168	0.4706352273072632	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	2153	0.46737898726593063	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT	1255	0.27243875012482255	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	684	0.14848454588476384	No Hit
TCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	586	0.12721044428139122	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC	495	0.10745592136397383	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC	495	0.10745592136397383	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG	475	0.10311426797553044	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTTAG	30	2.1626583E-6	45.000004	1
TATTGCG	30	2.1626583E-6	45.000004	1
CGTAGTA	25	3.887153E-5	45.000004	33
TGCGACG	30	2.1626583E-6	45.000004	1
TGCGAAA	25	3.887153E-5	45.000004	26
GCGATAT	25	3.887153E-5	45.000004	9
TAGTCAG	30	2.1626583E-6	45.000004	33
GTTGATC	35	1.2098099E-7	45.0	16
CGAAATT	20	7.028881E-4	45.0	28
ATATGCG	20	7.028881E-4	45.0	1
GCCGATT	35	1.2098099E-7	45.0	9
CATCGAA	20	7.028881E-4	45.0	41
GCTACGA	40	6.7993824E-9	45.0	10
TGGTCAA	40	6.7993824E-9	45.0	14
ATCGAGA	20	7.028881E-4	45.0	16
CAAAGCG	20	7.028881E-4	45.0	1
ATTGGGC	110	0.0	40.909092	4
CATATTA	50	1.0786607E-9	40.500004	28
AATGGGC	100	0.0	40.500004	4
AGTACGG	50	1.0786607E-9	40.500004	2