##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549752_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 460654 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.16185032584109 33.0 31.0 34.0 30.0 34.0 2 32.2710581043473 34.0 31.0 34.0 30.0 34.0 3 32.31513674037347 34.0 31.0 34.0 30.0 34.0 4 35.87663626062077 37.0 35.0 37.0 35.0 37.0 5 35.91672491718296 37.0 35.0 37.0 35.0 37.0 6 35.944513669695695 37.0 35.0 37.0 35.0 37.0 7 36.137033435072745 37.0 35.0 37.0 35.0 37.0 8 35.85853807847104 37.0 35.0 37.0 35.0 37.0 9 37.57774381640016 39.0 37.0 39.0 35.0 39.0 10 37.29962401281656 39.0 37.0 39.0 34.0 39.0 11 37.18326118952619 39.0 37.0 39.0 34.0 39.0 12 36.938893399384355 39.0 35.0 39.0 33.0 39.0 13 36.872494323288194 39.0 35.0 39.0 33.0 39.0 14 37.98731368879897 40.0 36.0 41.0 33.0 41.0 15 38.15266555809784 40.0 37.0 41.0 34.0 41.0 16 38.25616840405163 40.0 37.0 41.0 34.0 41.0 17 38.208049859547515 40.0 36.0 41.0 34.0 41.0 18 38.21735402275895 40.0 36.0 41.0 34.0 41.0 19 38.21944887051887 40.0 36.0 41.0 34.0 41.0 20 38.106557199112565 40.0 36.0 41.0 34.0 41.0 21 38.09443096119865 40.0 36.0 41.0 34.0 41.0 22 38.07281169815089 40.0 36.0 41.0 34.0 41.0 23 38.10897332922323 40.0 36.0 41.0 34.0 41.0 24 38.03142271639886 40.0 36.0 41.0 34.0 41.0 25 37.95964433175442 40.0 35.0 41.0 34.0 41.0 26 37.79727300750672 40.0 35.0 41.0 34.0 41.0 27 37.77078675101052 40.0 35.0 41.0 34.0 41.0 28 37.78996817568066 40.0 35.0 41.0 34.0 41.0 29 37.816866889248764 40.0 36.0 41.0 34.0 41.0 30 37.69743017535938 40.0 36.0 41.0 33.0 41.0 31 37.70419664216527 40.0 35.0 41.0 33.0 41.0 32 37.65113512527841 40.0 35.0 41.0 33.0 41.0 33 37.62045048995559 40.0 35.0 41.0 33.0 41.0 34 37.56064638535647 40.0 35.0 41.0 33.0 41.0 35 37.52436535881594 40.0 35.0 41.0 33.0 41.0 36 37.44882710233711 40.0 35.0 41.0 33.0 41.0 37 37.4080720019798 40.0 35.0 41.0 33.0 41.0 38 37.33936750793437 39.0 35.0 41.0 33.0 41.0 39 37.31035875081949 39.0 35.0 41.0 33.0 41.0 40 37.23696310028785 39.0 35.0 41.0 33.0 41.0 41 37.13967316033292 39.0 35.0 41.0 33.0 41.0 42 37.1124054062268 39.0 35.0 41.0 33.0 41.0 43 37.07181745952494 39.0 35.0 41.0 33.0 41.0 44 37.005613757831256 39.0 35.0 41.0 33.0 41.0 45 36.895524623687194 39.0 35.0 41.0 32.0 41.0 46 36.82867618646533 39.0 35.0 41.0 32.0 41.0 47 36.778050337129386 39.0 35.0 41.0 32.0 41.0 48 36.751294898123106 39.0 35.0 41.0 32.0 41.0 49 36.73026609993618 39.0 35.0 41.0 32.0 41.0 50 36.6090992371715 38.0 35.0 41.0 32.0 41.0 51 35.65809262483339 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 10.0 9 12.0 10 7.0 11 3.0 12 7.0 13 13.0 14 12.0 15 18.0 16 33.0 17 39.0 18 79.0 19 129.0 20 243.0 21 403.0 22 617.0 23 931.0 24 1258.0 25 1698.0 26 2334.0 27 2931.0 28 3678.0 29 4574.0 30 5878.0 31 7531.0 32 10299.0 33 15288.0 34 33468.0 35 46145.0 36 31195.0 37 46487.0 38 85905.0 39 159285.0 40 144.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.25640936581469 20.206271952484943 22.61523833506276 10.922080346637607 2 34.76470409461331 23.035727465733498 23.56497501378475 18.634593425868438 3 33.752447607097736 23.900367738042 24.964289900880054 17.38289475398021 4 31.035657999279287 25.70519305161792 23.839584590603792 19.419564358499002 5 25.824588519800113 29.67237883530806 23.204400699874526 21.298631945017302 6 28.11155444216266 33.85794978443691 23.110403904014724 14.920091869385699 7 81.6252545294299 4.775601644618304 8.79901183968879 4.8001319862630085 8 80.57479149209603 4.943189465412218 8.762107785887022 5.71991125660474 9 73.72279411445467 7.496732905825196 10.966148128530307 7.81432485118983 10 43.46537748505386 24.784979615937342 17.497297320765696 14.252345578243105 11 33.83602443482527 22.956926456733253 23.84436040933108 19.362688699110393 12 31.400356883908533 20.954772996652586 28.157575968080163 19.487294151358718 13 25.510035731807385 24.985346919814003 30.16016359349968 19.34445375487893 14 21.376130458001015 27.1346824297629 29.673464248655172 21.81572286358091 15 20.671697195726075 25.07217998758287 34.14884056146262 20.107282255228437 16 23.773591459099457 23.40802424379252 31.486755786338556 21.33162851076947 17 22.62652663387271 24.266369118687777 27.437078588267983 25.670025659171525 18 23.549779226925196 24.211881368662812 30.28455196307858 21.953787441333407 19 23.73408241326462 26.34971149713234 27.496342157020237 22.419863932582807 20 25.32052256140183 27.120137890911618 27.8827493085917 19.676590239094853 21 24.45675061977102 26.98728329722525 28.552666426428512 20.003299656575216 22 22.007189778011263 24.878759329127718 27.86798768707099 25.24606320579003 23 21.881281829746406 25.713442193055958 28.77126867453664 23.634007302661 24 24.00934323809193 23.37112018999075 29.58489451953093 23.03464205238639 25 21.015339061421372 25.370885740707777 28.61757414458574 24.996201053285112 26 20.38905556013841 26.256148866611383 29.833888341358154 23.52090723189205 27 22.420298097921652 25.715830102419602 28.643841147585825 23.220030652072925 28 18.645230476670125 27.292935695771664 29.929187633234488 24.132646194323723 29 22.633039113955377 23.511355594437475 30.49924672313711 23.356358568470046 30 25.81872728772571 25.27992810221989 27.7427309868144 21.15861362324 31 25.828061842510863 26.96079921155575 25.28535516895544 21.92578377697795 32 27.26818827145754 26.71115414172025 25.101051982616017 20.919605604206193 33 27.156824862043965 25.65157363227064 25.047649645938165 22.14395185974723 34 23.992844955215844 25.30576093988113 28.126316063683372 22.57507804121966 35 23.558462533702084 26.120689280891952 28.012998910245003 22.30784927516097 36 25.61228166910523 28.514242793940785 26.02235083164371 19.851124705310276 37 24.521224172589406 28.865265470396434 27.162034846110096 19.45147551090406 38 24.190173101720596 29.274032136918382 24.227077155522366 22.308717605838655 39 26.585897441463658 25.62921411732016 26.03776370117268 21.747124740043503 40 26.46715322128973 23.687409639338853 27.600107673004032 22.245329466367384 41 21.585615233993412 26.39269386567793 26.406370073851527 25.615320826477138 42 22.366244513235532 26.322141998115722 27.466167665970552 23.845445822678194 43 23.694573367429786 24.845545680706127 27.659371241756286 23.800509710107804 44 23.427344601371093 24.392711232291482 26.801460532199872 25.37848363413755 45 24.515145857845585 23.793997230025138 26.264180925380003 25.426675986749274 46 25.811346476965358 25.120372340194592 26.70399041362932 22.364290769210733 47 21.73648768924182 25.1370877057401 29.648065576332776 23.478359028685304 48 22.553803939616284 24.00825782474482 29.44682994177843 23.99110829386047 49 24.373825040051752 22.931961949749706 30.072896360391965 22.62131664980658 50 23.093471455799797 22.672982325129055 29.423819178819677 24.80972704025147 51 21.574109852514034 23.758395672239903 26.64190477017458 28.025589705071486 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 236.0 1 428.5 2 621.0 3 953.5 4 1286.0 5 872.5 6 459.0 7 485.0 8 511.0 9 518.5 10 526.0 11 567.5 12 609.0 13 659.5 14 710.0 15 741.5 16 773.0 17 765.0 18 757.0 19 772.5 20 788.0 21 921.5 22 1055.0 23 1406.5 24 1758.0 25 1881.5 26 2258.5 27 2512.0 28 3179.0 29 3846.0 30 4430.5 31 5015.0 32 5881.0 33 6747.0 34 7957.0 35 9167.0 36 10339.5 37 11512.0 38 12598.0 39 13684.0 40 15831.0 41 17978.0 42 21130.0 43 24282.0 44 27395.0 45 30508.0 46 35965.0 47 41422.0 48 45740.0 49 50058.0 50 51749.0 51 53440.0 52 46468.0 53 39496.0 54 34912.5 55 30329.0 56 26934.0 57 23539.0 58 21516.0 59 19493.0 60 18310.5 61 17128.0 62 16139.5 63 15151.0 64 13510.5 65 11870.0 66 9709.0 67 7548.0 68 6158.5 69 4769.0 70 4292.0 71 3815.0 72 2888.0 73 1961.0 74 1749.5 75 1228.5 76 919.0 77 668.5 78 418.0 79 317.0 80 216.0 81 186.0 82 156.0 83 91.5 84 27.0 85 16.5 86 6.0 87 5.5 88 5.0 89 2.5 90 0.0 91 1.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 460654.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.66853889098046 #Duplication Level Percentage of deduplicated Percentage of total 1 68.82708326079388 21.108260797364075 2 12.8518587779906 7.882954615083866 3 4.752582480274293 4.372642818866536 4 2.4171076675370426 2.9651664202218746 5 1.3117824291791942 2.0115225222893467 6 0.9530504710905422 1.7537199262624525 7 0.726472783568647 1.559590117127972 8 0.535692363073827 1.314312165642471 9 0.4647558814944136 1.2828045443780998 >10 6.941574035040405 48.052002081156225 >50 0.16656814767222913 3.3219958276363717 >100 0.04789727851519036 2.8740788875716206 >500 0.00142976950791613 0.27844078016751533 >1k 0.002144654261874195 1.2225084962315476 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC 2168 0.4706352273072632 No Hit GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC 2153 0.46737898726593063 No Hit CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT 1255 0.27243875012482255 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 684 0.14848454588476384 No Hit TCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC 586 0.12721044428139122 No Hit GAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC 495 0.10745592136397383 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC 495 0.10745592136397383 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG 475 0.10311426797553044 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.283292883595931 0.0 2 0.0 0.0 0.0 1.4837600455005275 0.0 3 0.0 0.0 0.0 2.018868825626175 0.0 4 0.0 0.0 0.0 2.6994229942646757 0.0 5 0.0 0.0 0.0 4.72024556391565 0.0 6 0.0 0.0 0.0 5.662167266538443 0.0 7 0.0 0.0 0.0 6.60756229187199 0.0 8 0.0 0.0 0.0 8.078297377207187 0.0 9 0.0 0.0 0.0 8.577153351539334 0.0 10 0.0 0.0 0.0 9.837969495543293 0.0 11 0.0 0.0 0.0 11.760670698615447 0.0 12 0.0 0.0 0.0 13.273302739149123 0.0 13 0.0 0.0 0.0 13.862030938622047 0.0 14 0.0 0.0 0.0 14.107985603077363 0.0 15 0.0 0.0 0.0 14.623991108293861 0.0 16 0.0 0.0 0.0 15.674019980288893 0.0 17 0.0 0.0 0.0 16.811099002722216 0.0 18 0.0 0.0 0.0 17.97596460684158 0.0 19 0.0 0.0 0.0 18.753554728711787 0.0 20 0.0 0.0 0.0 19.516166146391868 0.0 21 0.0 0.0 0.0 20.403165933650854 0.0 22 0.0 0.0 0.0 21.358980927116665 0.0 23 0.0 0.0 0.0 22.265952319962487 0.0 24 0.0 0.0 0.0 23.013367950783017 0.0 25 0.0 0.0 0.0 23.70607874890916 0.0 26 0.0 0.0 0.0 24.333881828878074 0.0 27 0.0 0.0 0.0 24.933247079152682 0.0 28 0.0 0.0 0.0 25.557793919080265 0.0 29 0.0 0.0 0.0 26.203180695272373 0.0 30 0.0 0.0 0.0 26.93431512588624 0.0 31 0.0 0.0 0.0 27.568413603268397 0.0 32 0.0 0.0 0.0 28.224437430262192 0.0 33 0.0 0.0 0.0 28.85571383294186 0.0 34 0.0 0.0 0.0 29.47505068880331 0.0 35 0.0 0.0 0.0 30.146270302656657 0.0 36 0.0 0.0 0.0 30.734564336790736 0.0 37 0.0 0.0 0.0 31.29420345856109 0.0 38 0.0 0.0 0.0 31.95261519491853 0.0 39 0.0 0.0 0.0 32.621663982077656 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTTAG 30 2.1626583E-6 45.000004 1 TATTGCG 30 2.1626583E-6 45.000004 1 CGTAGTA 25 3.887153E-5 45.000004 33 TGCGACG 30 2.1626583E-6 45.000004 1 TGCGAAA 25 3.887153E-5 45.000004 26 GCGATAT 25 3.887153E-5 45.000004 9 TAGTCAG 30 2.1626583E-6 45.000004 33 GTTGATC 35 1.2098099E-7 45.0 16 CGAAATT 20 7.028881E-4 45.0 28 ATATGCG 20 7.028881E-4 45.0 1 GCCGATT 35 1.2098099E-7 45.0 9 CATCGAA 20 7.028881E-4 45.0 41 GCTACGA 40 6.7993824E-9 45.0 10 TGGTCAA 40 6.7993824E-9 45.0 14 ATCGAGA 20 7.028881E-4 45.0 16 CAAAGCG 20 7.028881E-4 45.0 1 ATTGGGC 110 0.0 40.909092 4 CATATTA 50 1.0786607E-9 40.500004 28 AATGGGC 100 0.0 40.500004 4 AGTACGG 50 1.0786607E-9 40.500004 2 >>END_MODULE