SRR3549748_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549748_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	359647
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17577	4.887292261578715	No Hit
CGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4319	1.200899771164503	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	494	0.13735690830175143	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	473	0.13151784944681869	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	413	0.11483482414701082	Illumina Single End Adapter 1 (95% over 21bp)
TTGTGTGTGTGCTATGAGACTGTACATTTTTTTAAATGGCAATATGCAATA	388	0.1078835636054242	No Hit
GGGCGTGGGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGC	383	0.10649331149710688	No Hit
GCTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCA	376	0.10454695854546264	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	370	0.10287865601548184	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGCTTA	55	1.8189894E-12	45.000004	7
AACCCGA	90	0.0	45.000004	24
CTTTTCG	45	3.8380676E-10	45.000004	1
CGGGAAT	45	3.8380676E-10	45.000004	6
TCGTAGG	35	1.2088094E-7	45.000004	2
TATAGGG	35	1.2088094E-7	45.000004	3
TCACGAC	25	3.8854418E-5	45.0	25
TCGCCGG	25	3.8854418E-5	45.0	26
ATTTAGG	20	7.026815E-4	45.0	2
TTTAGCG	20	7.026815E-4	45.0	1
CGTGGCC	20	7.026815E-4	45.0	41
TCGTTTA	25	3.8854418E-5	45.0	38
CTCACGT	25	3.8854418E-5	45.0	45
ACGTTTG	20	7.026815E-4	45.0	15
CAACGCG	20	7.026815E-4	45.0	32
GAATACC	20	7.026815E-4	45.0	28
TAACGCC	25	3.8854418E-5	45.0	12
TGACGAC	20	7.026815E-4	45.0	15
TGATTTG	20	7.026815E-4	45.0	1
ATGAGAC	80	0.0	45.0	14