SRR3549738_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549738_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	695777
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	3535	0.508065084071477	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	3321	0.477308103027263	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	2391	0.34364458727437097	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2053	0.29506580412977146	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	2024	0.290897802025649	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC	1726	0.24806798730052879	No Hit
TTTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCG	939	0.13495703364727493	No Hit
TTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGG	902	0.12963923785925663	No Hit
TCCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG	877	0.1260461325970821	No Hit
GCTCTGGAGCCGCAGAGAGGACAGGCAGAATTTGAAACCTAAAGAACTCCC	833	0.11972226733565496	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACCG	25	3.8892118E-5	45.000004	23
TATTGCG	50	2.1827873E-11	45.000004	1
CTCGGTA	25	3.8892118E-5	45.000004	25
GCGATAT	25	3.8892118E-5	45.000004	9
TACGTAC	25	3.8892118E-5	45.000004	45
GATCGGA	20	7.0313655E-4	45.0	30
CAATTCG	20	7.0313655E-4	45.0	1
GTCGTAC	20	7.0313655E-4	45.0	43
ATGGTCG	20	7.0313655E-4	45.0	44
CGGTATG	20	7.0313655E-4	45.0	14
ATCGGGT	20	7.0313655E-4	45.0	10
ATTTCGA	20	7.0313655E-4	45.0	12
CAGACGA	20	7.0313655E-4	45.0	31
GCCGAAC	30	2.1642627E-6	44.999996	21
GGCGATA	95	0.0	42.63158	8
TCGTTCA	75	0.0	42.0	16
ACACGAC	65	0.0	41.53846	26
ACATACG	65	0.0	41.53846	17
TTACGGG	120	0.0	41.249996	3
TACGGGA	115	0.0	41.086956	4