##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549738_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 695777 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.452642154023486 33.0 31.0 34.0 31.0 34.0 2 32.589477663101825 34.0 31.0 34.0 31.0 34.0 3 32.619000053177956 34.0 31.0 34.0 31.0 34.0 4 36.0629224593512 37.0 35.0 37.0 35.0 37.0 5 36.0811912437462 37.0 35.0 37.0 35.0 37.0 6 35.9117547720031 37.0 35.0 37.0 35.0 37.0 7 36.024497791677504 37.0 35.0 37.0 35.0 37.0 8 36.002349890841465 37.0 35.0 37.0 35.0 37.0 9 37.90469791326819 39.0 38.0 39.0 35.0 39.0 10 37.462513132799735 39.0 37.0 39.0 35.0 39.0 11 37.35470272802924 39.0 37.0 39.0 35.0 39.0 12 37.18615878363326 39.0 37.0 39.0 34.0 39.0 13 37.13793212480436 39.0 37.0 39.0 33.0 39.0 14 38.28926509499452 40.0 38.0 41.0 34.0 41.0 15 38.35085666815661 40.0 38.0 41.0 34.0 41.0 16 38.42448226946277 40.0 38.0 41.0 34.0 41.0 17 38.43084062853472 40.0 38.0 41.0 34.0 41.0 18 38.426320502114905 40.0 38.0 41.0 34.0 41.0 19 38.38454562309476 40.0 37.0 41.0 34.0 41.0 20 38.31396841229302 40.0 37.0 41.0 34.0 41.0 21 38.250249720815724 40.0 37.0 41.0 34.0 41.0 22 38.14158846871914 40.0 37.0 41.0 34.0 41.0 23 37.94265116553149 40.0 36.0 41.0 33.0 41.0 24 37.6560823367257 40.0 36.0 41.0 33.0 41.0 25 37.612414609853445 39.0 36.0 41.0 33.0 41.0 26 37.72492910803318 40.0 36.0 41.0 33.0 41.0 27 37.77952274938666 40.0 36.0 41.0 33.0 41.0 28 37.730461052894825 40.0 36.0 41.0 33.0 41.0 29 37.730854857231556 40.0 36.0 41.0 33.0 41.0 30 37.62793395010183 40.0 36.0 41.0 33.0 41.0 31 37.5094592089132 40.0 36.0 41.0 33.0 41.0 32 37.41322147757112 40.0 35.0 41.0 33.0 41.0 33 37.287952892952774 40.0 35.0 41.0 33.0 41.0 34 37.16932724134313 39.0 35.0 41.0 32.0 41.0 35 37.10101368685657 39.0 35.0 41.0 32.0 41.0 36 37.00153210008379 39.0 35.0 41.0 31.0 41.0 37 36.91877282520118 39.0 35.0 41.0 31.0 41.0 38 36.80848461504189 39.0 35.0 41.0 31.0 41.0 39 36.80052373102301 39.0 35.0 41.0 31.0 41.0 40 36.7347339736726 39.0 35.0 41.0 31.0 41.0 41 36.7030657811339 39.0 35.0 41.0 31.0 41.0 42 36.67769558349874 39.0 35.0 41.0 31.0 41.0 43 36.52587969996134 39.0 35.0 41.0 31.0 41.0 44 36.38332827903193 39.0 35.0 41.0 31.0 41.0 45 36.3098880819573 39.0 35.0 41.0 31.0 41.0 46 36.16954857662728 38.0 35.0 40.0 30.0 41.0 47 36.068096530928734 38.0 35.0 40.0 30.0 41.0 48 35.99664978865355 38.0 35.0 40.0 30.0 41.0 49 35.95042377083462 38.0 35.0 40.0 30.0 41.0 50 35.80729889030537 38.0 35.0 40.0 29.0 41.0 51 34.984526651498975 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 7.0 10 10.0 11 4.0 12 5.0 13 12.0 14 15.0 15 24.0 16 50.0 17 68.0 18 129.0 19 258.0 20 451.0 21 706.0 22 1164.0 23 1720.0 24 2595.0 25 3874.0 26 5187.0 27 6213.0 28 7083.0 29 8174.0 30 10047.0 31 12364.0 32 16280.0 33 22961.0 34 41286.0 35 55058.0 36 56830.0 37 84740.0 38 150036.0 39 208282.0 40 141.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.28004949861809 4.336590603023669 54.6348902018894 16.74846969646884 2 20.237806078671756 4.222042407265547 54.31639735145025 21.223754162612448 3 18.94342583902601 4.080330335725383 55.88600945417856 21.09023437107004 4 17.47240854469176 4.39652359879674 54.34902274723079 23.782045109280702 5 16.445786509183257 5.172921783847411 54.12783118729133 24.253460519678 6 21.478002290963914 6.302162905643619 53.971602970491986 18.248231832900483 7 83.40517148454174 1.9657160268304357 10.22310309193894 4.406009396688882 8 85.30075009665453 2.4131294940764065 7.935444833617668 4.350675575651394 9 80.31653820117653 4.813036360788011 10.131550769858734 4.738874668176729 10 38.02425202327757 27.178248203088057 18.801426319064873 15.996073454569496 11 28.57955925533612 24.935431898438722 25.420357384621795 21.064651461603358 12 25.164815738375946 21.757402156150608 31.398997092459226 21.678785013014227 13 23.416410717801824 23.285621686258672 33.162924327765936 20.135043268173565 14 21.437472063606585 25.366029633057718 31.503628317693742 21.692869985641952 15 18.72108448540265 25.475260033027823 34.55388723685894 21.24976824471059 16 21.569554613044122 24.0117163976389 32.245963864859 22.172765124457978 17 21.375239480465723 25.225898527832914 29.59971370137271 23.799148290328652 18 22.67738082747777 23.810071330325663 32.12925980594357 21.383288036252996 19 22.802995787443393 26.02026223919445 29.770745511852216 21.40599646150994 20 24.68664529008576 25.811430961356873 29.95629346759091 19.54563028096646 21 24.764974984801164 26.375692211728758 29.81127573920955 19.048057064260533 22 23.131261884195656 24.31152510071474 29.529432562444573 23.02778045264503 23 21.887760015062298 25.937908266585413 28.044474019693087 24.129857698659197 24 22.35903170124911 25.815024066619046 29.904121579184135 21.92182265294771 25 22.41795862754877 26.11569511495781 27.08252787890373 24.38381837858969 26 22.170178088669214 27.251834998857394 27.622068565071856 22.95591834740154 27 21.393923627829032 26.64603745165477 29.741425772912873 22.218613147603328 28 19.939578341911275 25.506160738282524 32.12164242278776 22.432618497018442 29 22.10133419184595 24.401640180690077 31.218192035666597 22.278833591797373 30 24.431247368050396 25.07311969208525 30.168430402269692 20.327202537594662 31 23.69020533877952 26.4568963906539 28.67197392267925 21.180924347887327 32 22.71259325904708 26.06007384549935 28.45954953957949 22.76778335587408 33 23.232012555747026 25.599581475099065 28.96459641523074 22.20380955392317 34 21.664556316176018 25.103876673129466 30.003578732841124 23.22798827785339 35 22.671344410637317 24.725881999548708 28.85723442999697 23.74553915981701 36 24.45956103751633 26.634395790605325 28.248274950163633 20.65776822171472 37 21.355118090997546 27.303000817790757 31.213880309351993 20.128000781859708 38 20.51619987438504 27.753863666088417 30.53564576006393 21.194290699462613 39 22.258568478118708 24.89791987950162 31.230264869347508 21.613246773032163 40 22.322094579153955 24.43139109226088 30.3924964464189 22.854017882166268 41 19.60311996516125 24.962020877378816 29.048675078365626 26.386184079094306 42 20.931131670060953 24.783946580585447 29.275471882514083 25.009449866839518 43 21.959190947674326 23.5888797703862 30.612538212674462 23.83939106926501 44 21.39104914361929 24.374763753329013 29.419052368790577 24.81513473426112 45 23.14908368629604 24.15874626496708 28.2662404764745 24.42592957226238 46 23.225401242064628 24.47436463119649 30.368925675899032 21.931308450839854 47 20.09595028292111 25.426250077251762 32.40075483955348 22.07704480027365 48 20.66337346592371 23.65987953036677 32.97981968360552 22.696927320104 49 22.26891662127377 22.831884353751274 32.60786142686521 22.291337598109738 50 21.541240943578185 22.98006401476335 30.63740250108871 24.84129254056975 51 20.92466408058904 22.912657360044957 28.989316979434506 27.1733615799315 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 429.0 1 1272.5 2 2116.0 3 3075.0 4 4034.0 5 2909.0 6 1784.0 7 1914.5 8 2045.0 9 2202.5 10 2360.0 11 2638.5 12 2917.0 13 3116.5 14 3316.0 15 3146.0 16 2976.0 17 3176.0 18 3376.0 19 3092.5 20 2809.0 21 2884.5 22 2960.0 23 3504.0 24 4048.0 25 4272.0 26 6175.0 27 7854.0 28 8931.0 29 10008.0 30 10931.0 31 11854.0 32 13807.5 33 15761.0 34 17318.0 35 18875.0 36 20517.5 37 22160.0 38 24038.0 39 25916.0 40 29488.0 41 33060.0 42 36098.0 43 39136.0 44 42233.5 45 45331.0 46 51695.5 47 58060.0 48 65443.5 49 72827.0 50 70463.0 51 68099.0 52 59262.5 53 50426.0 54 43847.0 55 37268.0 56 34768.0 57 32268.0 58 29078.0 59 25888.0 60 23615.0 61 21342.0 62 19871.5 63 18401.0 64 16371.0 65 14341.0 66 12079.0 67 9817.0 68 8085.0 69 6353.0 70 5369.5 71 4386.0 72 3556.0 73 2726.0 74 2474.0 75 1559.5 76 897.0 77 656.5 78 416.0 79 341.0 80 266.0 81 178.0 82 90.0 83 58.5 84 27.0 85 25.0 86 23.0 87 15.0 88 7.0 89 4.0 90 1.0 91 1.5 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 695777.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.48674413297565 #Duplication Level Percentage of deduplicated Percentage of total 1 73.25955852842428 23.79964533207674 2 10.822691541027742 7.031880218469764 3 3.967542620102322 3.8667762580781995 4 2.0366629616385397 2.6465819407943854 5 1.2391813962951634 2.012848447789224 6 0.9192679552669765 1.7918413711441181 7 0.6881198912769562 1.564834238850785 8 0.5283360481427363 1.3731134409792465 9 0.4695917340256709 1.3729955859227094 >10 5.6482092762480525 40.598035867084704 >50 0.35488581622648957 7.313608248713124 >100 0.05877375716723389 3.402464644634514 >500 0.004486546348643808 1.0317874922621542 >1k 0.002691927809186285 2.19358691320037 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT 3535 0.508065084071477 No Hit CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 3321 0.477308103027263 No Hit GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 2391 0.34364458727437097 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2053 0.29506580412977146 No Hit TCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 2024 0.290897802025649 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC 1726 0.24806798730052879 No Hit TTTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCG 939 0.13495703364727493 No Hit TTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGG 902 0.12963923785925663 No Hit TCCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG 877 0.1260461325970821 No Hit GCTCTGGAGCCGCAGAGAGGACAGGCAGAATTTGAAACCTAAAGAACTCCC 833 0.11972226733565496 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.8744842097396146E-4 0.0 0.0 0.5362350293269251 0.0 2 2.8744842097396146E-4 0.0 0.0 1.7481175721531468 0.0 3 2.8744842097396146E-4 0.0 0.0 2.3040428183167885 0.0 4 2.8744842097396146E-4 0.0 0.0 2.874915382371076 0.0 5 2.8744842097396146E-4 0.0 0.0 3.7950377779087265 0.0 6 2.8744842097396146E-4 0.0 0.0 4.347657367231167 0.0 7 2.8744842097396146E-4 0.0 0.0 4.843505893411251 0.0 8 2.8744842097396146E-4 0.0 0.0 5.690328941600542 0.0 9 2.8744842097396146E-4 0.0 0.0 6.099080596225515 0.0 10 2.8744842097396146E-4 0.0 0.0 7.095089374900291 0.0 11 2.8744842097396146E-4 0.0 0.0 9.231262315368285 0.0 12 4.3117263146094225E-4 0.0 0.0 10.845428923347567 0.0 13 4.3117263146094225E-4 0.0 0.0 11.376633605307447 0.0 14 4.3117263146094225E-4 0.0 0.0 11.54924638210231 0.0 15 4.3117263146094225E-4 0.0 0.0 11.822609830448549 0.0 16 4.3117263146094225E-4 0.0 0.0 12.432000482913347 0.0 17 4.3117263146094225E-4 0.0 0.0 13.332432661614282 0.0 18 4.3117263146094225E-4 0.0 0.0 14.314212743450847 0.0 19 5.748968419479229E-4 0.0 0.0 15.001214469578615 0.0 20 5.748968419479229E-4 0.0 0.0 15.682610951497391 0.0 21 5.748968419479229E-4 0.0 0.0 16.6904051154321 0.0 22 5.748968419479229E-4 0.0 0.0 17.71860811725596 0.0 23 5.748968419479229E-4 0.0 0.0 18.79438383275101 0.0 24 5.748968419479229E-4 0.0 0.0 19.583429748324534 0.0 25 5.748968419479229E-4 0.0 0.0 20.250022636563152 0.0 26 5.748968419479229E-4 0.0 0.0 20.853951769029443 0.0 27 5.748968419479229E-4 0.0 0.0 21.441783789921196 0.0 28 5.748968419479229E-4 0.0 0.0 22.0743140402744 0.0 29 5.748968419479229E-4 0.0 0.0 22.754704452719764 0.0 30 5.748968419479229E-4 0.0 0.0 23.438831694637795 0.0 31 5.748968419479229E-4 0.0 0.0 24.093351749195502 0.0 32 5.748968419479229E-4 0.0 0.0 24.731056071126236 0.0 33 5.748968419479229E-4 0.0 0.0 25.378389915159598 0.0 34 5.748968419479229E-4 0.0 0.0 25.92569170869402 0.0 35 5.748968419479229E-4 0.0 0.0 26.526746356950575 0.0 36 5.748968419479229E-4 0.0 0.0 27.113141135737457 0.0 37 5.748968419479229E-4 0.0 0.0 27.727418411358812 0.0 38 5.748968419479229E-4 0.0 0.0 28.364979009079057 0.0 39 5.748968419479229E-4 0.0 0.0 29.019211615215795 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACCG 25 3.8892118E-5 45.000004 23 TATTGCG 50 2.1827873E-11 45.000004 1 CTCGGTA 25 3.8892118E-5 45.000004 25 GCGATAT 25 3.8892118E-5 45.000004 9 TACGTAC 25 3.8892118E-5 45.000004 45 GATCGGA 20 7.0313655E-4 45.0 30 CAATTCG 20 7.0313655E-4 45.0 1 GTCGTAC 20 7.0313655E-4 45.0 43 ATGGTCG 20 7.0313655E-4 45.0 44 CGGTATG 20 7.0313655E-4 45.0 14 ATCGGGT 20 7.0313655E-4 45.0 10 ATTTCGA 20 7.0313655E-4 45.0 12 CAGACGA 20 7.0313655E-4 45.0 31 GCCGAAC 30 2.1642627E-6 44.999996 21 GGCGATA 95 0.0 42.63158 8 TCGTTCA 75 0.0 42.0 16 ACACGAC 65 0.0 41.53846 26 ACATACG 65 0.0 41.53846 17 TTACGGG 120 0.0 41.249996 3 TACGGGA 115 0.0 41.086956 4 >>END_MODULE